Gene: Sopen02g031990

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g031990
  • Transcript Identifier Sopen02g031990.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 53849958-53856619 : negative

Gene Family Information

  • ID HOM05D000793
  • #Genes/#Species 746/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g031990.1

Descriptions

  • Description Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing. | CRM family member 2 (CFM2) | FUNCTIONS IN: RNA binding | INVOLVED IN: Group I intron splicing, Group II intron splicing | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain | BEST Arabidopsis thaliana protein match is: CRM family member 3B
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing AT3G01370
GO:0000372
ISO
PLAZA Integrative OrthologyGroup I intron splicing AT3G01370

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Zm00001eb424440
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G01370

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009532
ISO
PLAZA Integrative Orthologyplastid stroma AT3G01370

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001890 RNA-binding, CRM domain
IPR035920 YhbY-like superfamily
Mapman id Description
16.11.4.1.2 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.splicing factor (CFM2)