Gene: AT3G01370

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G01370
  • Transcript Identifier AT3G01370.1
  • Gene Type Coding gene
  • Location Chr3 : 139033-143477 : positive

Gene Family Information

  • ID HOM05D000793
  • #Genes/#Species 746/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G01370.1
  • symbol CFM2
  • Alias ATCFM2,Arabidopsis thaliana CRM family member 2
  • uniprot Q8L7C2

Descriptions

  • Description CRM family member 2
  • Computational description CRM family member 2 (CFM2); FUNCTIONS IN: RNA binding; INVOLVED IN: Group I intron splicing, Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 1269 Blast hits to 881 proteins in 154 species: Archae - 0; Bacteria - 46; Metazoa - 247; Fungi - 72; Plants - 683; Viruses - 4; Other Eukaryotes - 217 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000372
IMP
Gene OntologyGroup I intron splicing1
GO:0000373
IMP
Gene OntologyGroup II intron splicing1
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Zm00001eb424440

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009532
IDA
Gene Ontologyplastid stroma1
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035920 YhbY-like superfamily
IPR001890 RNA-binding, CRM domain
Mapman id Description
16.11.4.1.2 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.splicing factor (CFM2)