Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 3081.6 1533 100.0
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 2722.6 1664 85.6
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 2714.9 1664 85.5
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 2635.5 1662 83.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 2351.2 1661 75.2
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 2239.5 1659 71.9
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 2238.4 1658 71.9
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 2237.6 1658 71.7
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 2235.7 1658 71.5
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 2230.7 1660 72.6
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 0.0e+00 2193.3 1660 70.7
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 0.0e+00 2189.1 1661 70.8
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 2175.6 1653 70.8
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 2163.7 1660 71.0
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 0.0e+00 2128.6 1670 69.5
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 2040.8 1641 68.6
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 2038.8 1641 68.5
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 2031.1 1662 66.6
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 2028.8 1656 68.2
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 2027.7 1656 68.2
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 2008.8 1648 68.0
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1885.9 1409 74.4
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1784.6 1671 59.7
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1351.3 1090 70.8
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1307.0 1712 47.1
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1268.4 1721 46.0
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1266.9 1731 46.4
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1263.4 1669 46.0
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1257.7 1693 45.5
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1256.1 1727 44.9
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1255.7 1718 45.3
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1248.4 1705 45.2
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1244.2 1721 45.6
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1243.0 1721 45.3
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1234.6 1749 44.7
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1226.5 1720 44.1
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1224.9 1754 44.8
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1224.9 1754 44.8
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1221.5 1749 44.4
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1220.3 1728 44.4
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1218.4 1710 44.3
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1210.3 1692 45.2
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1203.3 1731 43.7
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1198.3 1754 44.0
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1198.0 1726 43.6
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1195.3 1724 44.7
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1191.8 1740 43.6
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1188.7 1716 44.1
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1187.6 1717 44.2
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1187.2 1716 43.8
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1184.9 1726 43.6
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1182.2 1726 43.5
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1180.6 1720 44.0
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1177.2 1706 42.9
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1174.5 1729 43.5
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1170.2 1723 42.6
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1168.3 1717 42.9
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1167.9 1881 41.7
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1166.4 1732 43.2
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1165.2 1677 44.2
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1163.7 1689 43.5
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1157.9 1708 42.9
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1157.5 1719 43.0
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1157.1 1711 43.3
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1153.7 1720 43.0
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1151.3 1725 43.4
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1150.2 1702 43.5
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1146.7 1721 42.9
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1144.8 1707 42.9
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1142.5 1696 41.9
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1138.6 1720 41.6
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1138.3 1732 42.8
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1136.7 1720 43.1
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1135.9 1720 41.6
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1134.8 1723 42.4
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1134.4 1719 42.6
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1134.4 1727 42.3
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1130.9 1709 43.2
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1120.1 1718 42.2
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1118.2 1728 42.0
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1117.4 1697 42.0
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1113.6 1707 42.7
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1113.6 1726 40.9
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1112.1 1707 42.8
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1111.7 1727 41.6
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1109.0 1719 41.6
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1107.4 1702 41.9
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1099.3 1724 42.1
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1099.0 1705 40.8
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1088.2 1713 41.7
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1087.0 1703 43.4
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1081.2 1686 41.8
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.0e-311 1073.5 1701 40.9
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 2.1e-310 1069.7 1694 42.0
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 3.9e-309 1065.4 1735 40.2
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 5.1e-309 1065.1 1710 41.6
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 9.7e-308 1060.8 1687 40.6
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.3e-307 1060.4 1752 40.6
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 2.2e-307 1059.7 1687 41.1
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 8.2e-307 1057.7 1741 39.9
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 4.2e-303 1045.4 1749 39.5
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 1.3e-299 1033.9 1799 38.2
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 1.8e-298 1030.0 1723 39.6
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.8e-298 1030.0 1659 40.4
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.6e-297 1026.2 1729 39.4
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 3.3e-292 1009.2 1731 39.1
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 4.8e-291 1005.4 1800 38.0
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 1.6e-289 1000.3 1675 38.6
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.3e-285 986.5 1638 41.6
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 2.6e-284 983.0 1690 39.0
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 2.9e-280 969.5 1667 38.9
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 1.2e-265 921.0 1728 37.5
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 7.8e-265 918.3 1291 44.5
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.5e-257 892.9 1668 38.5
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 7.3e-255 885.2 1588 38.6
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 3.5e-249 866.3 1747 36.8
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 5.6e-239 832.4 1813 34.5
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.5e-233 813.1 1640 37.1
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 5.6e-223 779.2 1433 36.6
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 2.1e-222 777.3 934 48.8
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.3e-216 758.1 1236 40.9
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 3.4e-212 743.4 1217 40.6
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 6.7e-200 702.6 1574 34.1
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.3e-190 671.8 1243 37.9
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 6.3e-190 669.5 1719 32.5
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 7.2e-186 656.0 1218 37.8
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 7.2e-186 656.0 1736 32.3
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-181 642.1 1834 29.9
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 1.6e-180 638.3 1896 30.1
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.5e-180 637.1 1844 29.0
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.7e-177 626.7 1803 28.9
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.7e-177 626.7 1803 28.9
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.3e-175 620.5 1853 28.7
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.2e-161 575.5 1185 35.2
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.0e-156 558.1 920 39.9
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.6e-143 514.6 1448 32.0
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.3e-131 475.7 992 34.3
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 9.9e-127 459.5 400 59.5
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 1.1e-122 446.0 490 50.2
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 1.5e-122 445.7 657 44.3
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 2.4e-112 411.8 1758 25.4
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 1.3e-110 406.0 596 40.8
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.9e-106 392.1 491 46.6
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.8e-105 388.3 500 45.4
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 1.9e-101 375.6 492 45.5
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 1.2e-84 319.7 435 44.1
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 4.3e-82 311.2 356 45.8
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 7.7e-79 300.4 295 53.2
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 1.4e-77 296.2 1039 27.9
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 7.0e-64 250.8 457 35.7
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 2.5e-61 242.3 174 62.6
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 8.3e-57 227.3 486 34.0
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 1.1e-45 190.3 359 39.0
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 5.7e-42 177.9 232 44.8
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 4.9e-33 148.3 213 39.9
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 8.3e-33 147.5 1413 21.9
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 8.9e-27 127.5 267 32.2
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 1.5e-26 126.7 92 63.0
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.1e-24 120.6 78 71.8
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 1.7e-22 113.2 143 42.0
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.3e-21 108.6 257 31.1
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 2.8e-20 105.9 269 36.8
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.4e-18 99.0 122 41.0
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 7.6e-18 97.8 352 26.7
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.9e-17 95.1 259 28.2
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 4.6e-15 88.6 1327 21.7
vmacro07102 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 1.3e-14 87.0 79 57.0
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.3e-14 86.3 50 78.0
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 3.0e-14 85.9 79 50.6
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 3.3e-13 82.4 137 34.3
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.8e-12 79.3 800 21.5
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.1e-11 77.4 41 82.9
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.4e-09 67.8 188 28.2
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 6.0e-07 61.6 107 34.6
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 3.9e-06 58.9 33 81.8


User provided reference genes

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