Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06735 Brassica carinata HOM05D001720 ORTHO05D013983 0.0e+00 2160.2 1234 100.0
BcaC09g51483 Brassica carinata HOM05D001720 ORTHO05D013983 0.0e+00 1275.0 1918 49.8
C01p12560 Brassica napus HOM05D001720 ORTHO05D013983 0.0e+00 1275.0 1918 49.8
BraA01t01009Z Brassica rapa HOM05D001720 ORTHO05D013983 0.0e+00 1267.3 1933 48.9
A01p10620 Brassica napus HOM05D001720 ORTHO05D013983 0.0e+00 1261.1 1946 49.2
BolC1t01230H Brassica oleracea HOM05D001720 ORTHO05D013983 0.0e+00 1166.0 1911 47.9
BcaNung03820 Brassica carinata HOM05D001720 ORTHO05D013983 0.0e+00 1140.2 1320 56.7
Sp7g15420 Schrenkiella parvula HOM05D001720 ORTHO05D013983 3.9e-259 899.0 1769 42.7
Thhalv10024197m.g Eutrema salsugineum HOM05D001720 ORTHO05D013983 6.3e-233 812.0 1562 45.0
AT4G18600 Arabidopsis thaliana HOM05D001720 ORTHO05D013983 9.2e-216 755.0 1657 41.2
Carub.0007s2262 Capsella rubella HOM05D001720 ORTHO05D013983 9.2e-216 755.0 1717 38.3
CARHR225460 Cardamine hirsuta HOM05D001720 ORTHO05D013983 8.6e-214 748.4 1660 39.2
AL7G35660 Arabidopsis lyrata HOM05D001720 ORTHO05D013983 2.2e-201 707.2 1722 40.1
Aa31LG6G1350 Aethionema arabicum HOM05D001720 ORTHO05D013983 4.4e-125 453.8 1742 35.4
THA.LOC104798426 Tarenaya hassleriana HOM05D001720 ORTHO05D013983 9.7e-32 143.7 255 38.4
HanXRQChr05g0139831 Helianthus annuus HOM05D001720 ORTHO05D001813 1.2e-18 100.1 247 39.3
THA.LOC104820595 Tarenaya hassleriana HOM05D001720 ORTHO05D001813 1.2e-18 100.1 274 32.5
Lsat_1_v5_gn_7_24040 Lactuca sativa HOM05D001720 ORTHO05D001813 2.1e-18 99.4 313 34.8
MELO3C002651.2 Cucumis melo HOM05D001720 ORTHO05D001813 7.9e-18 97.4 201 35.8
Aa31LG6G6370 Aethionema arabicum HOM05D001720 ORTHO05D001813 3.9e-17 95.1 255 32.5
HanXRQChr14g0444371 Helianthus annuus HOM05D001720 ORTHO05D001813 7.4e-16 90.9 308 32.8
Potri.004G057100 Populus trichocarpa HOM05D001720 ORTHO05D001813 7.4e-16 90.9 201 38.8
BcaB03g12141 Brassica carinata HOM05D001720 ORTHO05D001813 9.7e-16 90.5 237 31.2
Manes.17G055800 Manihot esculenta HOM05D001720 ORTHO05D001813 1.7e-15 89.7 190 41.1
Psat5g218040 Pisum sativum HOM05D001720 ORTHO05D001813 2.2e-15 89.4 251 32.3
Phvul.002G238500 Phaseolus vulgaris HOM05D001720 ORTHO05D001813 2.8e-15 89.0 215 34.4
TPR.G24352 Trifolium pratense HOM05D001720 ORTHO05D001813 2.8e-15 89.0 192 35.4
DCAR_005219 Daucus carota HOM05D001720 ORTHO05D001813 4.8e-15 88.2 220 36.8
Psat7g072360 Pisum sativum HOM05D001720 ORTHO05D001813 4.8e-15 88.2 193 34.2
Sabra11G0047700 Salix brachista HOM05D001720 ORTHO05D001813 4.8e-15 88.2 209 36.8
CiPaw.10G059000 Carya illinoinensis HOM05D001720 ORTHO05D001813 6.3e-15 87.8 199 37.7
CsaV3_1G033340 Cucumis sativus L. HOM05D001720 ORTHO05D001813 6.3e-15 87.8 194 36.1
Duzib235G0736 Durio zibethinus HOM05D001720 ORTHO05D001813 8.2e-15 87.4 205 36.6
Ca_17921_v3 Cicer arietinum L. HOM05D001720 ORTHO05D001813 1.4e-14 86.7 409 26.9
Glyma.08G116000 Glycine max HOM05D001720 ORTHO05D001813 1.4e-14 86.7 216 34.7
Gohir.A05G154800 Gossypium hirsutum HOM05D001720 ORTHO05D001813 1.8e-14 86.3 237 34.2
Oeu043108.1 Olea europaea HOM05D001720 ORTHO05D001813 1.8e-14 86.3 185 38.9
CARHR028480 Cardamine hirsuta HOM05D001720 ORTHO05D001813 3.1e-14 85.5 244 32.4
Duzib192G0422 Durio zibethinus HOM05D001720 ORTHO05D001813 3.1e-14 85.5 221 36.2
Medtr8g086300 Medicago truncatula HOM05D001720 ORTHO05D001813 3.1e-14 85.5 213 33.3
Dinv40676 Davidia involucrata HOM05D001720 ORTHO05D001813 4.1e-14 85.1 219 35.2
VMungo0251G2112 Vigna mungo HOM05D001720 ORTHO05D001813 4.1e-14 85.1 215 34.4
CiPaw.09G069800 Carya illinoinensis HOM05D001720 ORTHO05D001813 5.3e-14 84.7 220 35.9
ClCG03G007710 Citrullus lanatus HOM05D001720 ORTHO05D001813 5.3e-14 84.7 224 33.0
Potri.011G066100 Populus trichocarpa HOM05D001720 ORTHO05D001813 5.3e-14 84.7 208 37.0
ECA236G4315 Erigeron canadensis HOM05D001720 ORTHO05D001813 7.0e-14 84.3 286 31.1
Lj4g0010429 Lotus japonicus HOM05D001720 ORTHO05D001813 7.0e-14 84.3 188 35.1
Thecc.06G170600 Theobroma cacao HOM05D001720 ORTHO05D001813 7.0e-14 84.3 181 38.7
C03p75560 Brassica napus HOM05D001720 ORTHO05D001813 1.2e-13 83.6 255 32.5
Cc02_g14970 Coffea canephora HOM05D001720 ORTHO05D001813 1.2e-13 83.6 256 30.1
COL.COLO4_31295 Corchorus olitorius HOM05D001720 ORTHO05D001813 1.2e-13 83.6 208 36.1
BcaC01g00079 Brassica carinata HOM05D001720 ORTHO05D001813 1.5e-13 83.2 284 30.6
Aa31LG9G13920 Aethionema arabicum HOM05D001720 ORTHO05D001813 2.0e-13 82.8 202 34.2
Ciclev10014081m.g Citrus clementina HOM05D001720 ORTHO05D001813 2.0e-13 82.8 98 53.1
Duzib160G0037 Durio zibethinus HOM05D001720 ORTHO05D001813 2.0e-13 82.8 209 35.9
Lj1A1192T66 Lonicera japonica HOM05D001720 ORTHO05D001813 2.0e-13 82.8 377 28.6
Sabra04G0037000 Salix brachista HOM05D001720 ORTHO05D001813 2.0e-13 82.8 198 36.9
arahy.Tifrunner.gnm1.ann1.HSUB4M Arachis hypogaea HOM05D001720 ORTHO05D001813 2.6e-13 82.4 197 33.0
Sed0005496 Sechium edule HOM05D001720 ORTHO05D001813 2.6e-13 82.4 142 40.1
arahy.Tifrunner.gnm1.ann1.4N7RMH Arachis hypogaea HOM05D001720 ORTHO05D001813 3.5e-13 82.0 197 32.5
MSTRG.14731 Avicennia marina HOM05D001720 ORTHO05D001813 3.5e-13 82.0 324 29.3
Haze_06230 Corylus avellana HOM05D001720 ORTHO05D001813 3.5e-13 82.0 112 50.0
BolC3t19813H Brassica oleracea HOM05D001720 ORTHO05D001813 4.5e-13 81.6 262 31.3
Cfa000608 Carpinus fangiana HOM05D001720 ORTHO05D001813 4.5e-13 81.6 179 39.1
Sp1g25100 Schrenkiella parvula HOM05D001720 ORTHO05D001813 4.5e-13 81.6 257 29.6
Atru.chr10.1666 Acer truncatum HOM05D001720 ORTHO05D001813 7.7e-13 80.9 113 48.7
Carub.0001s2737 Capsella rubella HOM05D001720 ORTHO05D001813 7.7e-13 80.9 279 30.1
RcHm_v2.0_Chr5g0010801 Rosa chinensis HOM05D001720 ORTHO05D001813 7.7e-13 80.9 234 34.2
Gohir.D05G157800 Gossypium hirsutum HOM05D001720 ORTHO05D001813 1.0e-12 80.5 228 33.3
CAN.G370.75 Capsicum annuum HOM05D001720 ORTHO05D001813 1.3e-12 80.1 105 51.4
QL05p047118 Quercus lobata HOM05D001720 ORTHO05D001813 1.3e-12 80.1 206 35.0
Lalb_Chr07g0186451 Lupinus albus HOM05D001720 ORTHO05D001813 1.7e-12 79.7 140 42.1
TWI38G1008 Tripterygium wilfordii HOM05D001720 ORTHO05D001813 1.7e-12 79.7 130 42.3
FAN25G1942 Fragaria x ananassa HOM05D001720 ORTHO05D001813 2.2e-12 79.3 179 36.9
CANSAT35G1540 Cannabis sativa HOM05D001720 ORTHO05D001813 2.9e-12 79.0 195 33.8
Cpa.g.sc7.70 Carica papaya HOM05D001720 ORTHO05D001813 2.9e-12 79.0 191 36.6
Migut.H01430 Erythranthe guttata HOM05D001720 ORTHO05D001813 2.9e-12 79.0 287 28.2
Gorai.009G162400 Gossypium raimondii HOM05D001720 ORTHO05D001813 3.8e-12 78.6 204 35.8
Nitab4.5_0000605g0220 Nicotiana tabacum HOM05D001720 ORTHO05D001813 3.8e-12 78.6 103 51.5
A08p25280 Brassica napus HOM05D001720 ORTHO05D001813 5.0e-12 78.2 230 32.2
BraA08t34479Z Brassica rapa HOM05D001720 ORTHO05D001813 5.0e-12 78.2 230 32.2
DCAR_028001 Daucus carota HOM05D001720 ORTHO05D001813 5.0e-12 78.2 115 47.8
Hund21175 Selenicereus undatus HOM05D001720 ORTHO05D001813 5.0e-12 78.2 106 48.1
AL4G30050 Arabidopsis lyrata HOM05D001720 ORTHO05D001813 6.5e-12 77.8 213 33.3
Peaxi162Scf00534g00039 Petunia axillaris HOM05D001720 ORTHO05D001813 6.5e-12 77.8 104 51.0
Gorai.011G040000 Gossypium raimondii HOM05D001720 ORTHO05D001813 1.1e-11 77.0 137 39.4
SGA_v2.0_scaffold109G31041 Striga asiatica HOM05D001720 ORTHO05D001813 1.1e-11 77.0 312 28.5
TWI38G1550 Tripterygium wilfordii HOM05D001720 ORTHO05D001813 1.1e-11 77.0 139 39.6
Gohir.D10G038101 Gossypium hirsutum HOM05D001720 ORTHO05D001813 1.5e-11 76.6 137 39.4
AT2G34150 Arabidopsis thaliana HOM05D001720 ORTHO05D001813 2.5e-11 75.9 232 31.0
FAN21G1201 Fragaria x ananassa HOM05D001720 ORTHO05D001813 2.5e-11 75.9 234 32.9
Glyma.05G158300 Glycine max HOM05D001720 ORTHO05D001813 2.5e-11 75.9 124 40.3
Prupe.4G061600 Prunus persica HOM05D001720 ORTHO05D001813 2.5e-11 75.9 319 29.8
unitig_8.g3366 Utricularia gibba HOM05D001720 ORTHO05D001813 2.5e-11 75.9 304 26.0
FvH4_3g07780 Fragaria vesca HOM05D001720 ORTHO05D001813 3.2e-11 75.5 234 33.8
SalBow7G2421 Salvia bowleyana HOM05D001720 ORTHO05D001813 3.2e-11 75.5 111 45.0
MSTRG.7408 Avicennia marina HOM05D001720 ORTHO05D001813 5.5e-11 74.7 133 42.1
Nitab4.5_0001923g0020 Nicotiana tabacum HOM05D001720 ORTHO05D001813 5.5e-11 74.7 105 49.5
Oeu003912.3 Olea europaea HOM05D001720 ORTHO05D001813 7.2e-11 74.3 106 52.8
AT1G29170 Arabidopsis thaliana HOM05D001720 ORTHO05D001813 9.4e-11 73.9 271 29.5
Thhalv10006666m.g Eutrema salsugineum HOM05D001720 ORTHO05D001813 9.4e-11 73.9 272 30.5
Gohir.A10G037350 Gossypium hirsutum HOM05D001720 ORTHO05D001813 9.4e-11 73.9 154 36.4
CSS0032805 Camellia sinensis var. sinensis HOM05D001720 ORTHO05D001813 1.2e-10 73.6 130 40.0
FAN16G0591 Fragaria x ananassa HOM05D001720 ORTHO05D001813 1.6e-10 73.2 179 35.8
PSO229G0113 Papaver somniferum HOM05D001720 ORTHO05D001813 1.6e-10 73.2 163 37.4
Rhsim02G0142800 Rhododendron simsii HOM05D001720 ORTHO05D001813 1.6e-10 73.2 116 40.5
MD05G1300900 Malus domestica HOM05D001720 ORTHO05D001813 2.1e-10 72.8 304 27.0
Actinidia07639 Actinidia chinensis HOM05D001720 ORTHO05D001813 3.6e-10 72.0 116 41.4
MSTRG.13220 Avicennia marina HOM05D001720 ORTHO05D001813 3.6e-10 72.0 123 42.3
AUR62031207 Chenopodium quinoa HOM05D001720 ORTHO05D001813 3.6e-10 72.0 168 33.9
Lalb_Chr12g0205161 Lupinus albus HOM05D001720 ORTHO05D001813 3.6e-10 72.0 236 33.9
AL1G42880 Arabidopsis lyrata HOM05D001720 ORTHO05D001813 4.7e-10 71.6 271 28.8
Thhalv10016256m.g Eutrema salsugineum HOM05D001720 ORTHO05D001813 4.7e-10 71.6 213 31.5
PSO675G6178 Papaver somniferum HOM05D001720 ORTHO05D001813 6.1e-10 71.2 312 29.8
Actinidia39507 Actinidia chinensis HOM05D001720 ORTHO05D001813 1.4e-09 70.1 147 36.1
Solyc02g076840.3 Solanum lycopersicum HOM05D001720 ORTHO05D001813 1.4e-09 70.1 105 50.5
TAR627G0705 Trochodendron aralioides HOM05D001720 ORTHO05D001813 1.4e-09 70.1 232 32.8
Oeu034634.1 Olea europaea HOM05D001720 ORTHO05D001813 2.3e-09 69.3 267 29.6
Sopen02g021740 Solanum pennellii HOM05D001720 ORTHO05D001813 2.3e-09 69.3 105 49.5
Ah.09g233550 Amaranthus hybridus HOM05D001720 ORTHO05D001813 6.7e-09 67.8 234 27.8
BcaC02g11469 Brassica carinata HOM05D001720 ORTHO05D001813 6.7e-09 67.8 227 32.2
Carub.0004s1578 Capsella rubella HOM05D001720 ORTHO05D001813 6.7e-09 67.8 233 30.5
A05p11530 Brassica napus HOM05D001720 ORTHO05D001813 8.8e-09 67.4 279 28.3
CDE02G2654 Ceratophyllum demersum HOM05D001720 ORTHO05D001813 1.1e-08 67.0 216 31.9
Sc05g0007090 Simmondsia chinensis HOM05D001720 ORTHO05D001813 1.1e-08 67.0 97 45.4
C04p15000 Brassica napus HOM05D001720 ORTHO05D001813 4.4e-08 65.1 227 28.6
CARHR128240 Cardamine hirsuta HOM05D001720 ORTHO05D001813 4.4e-08 65.1 216 30.6
EL10Ac8g20597 Beta vulgaris HOM05D001720 ORTHO05D001813 5.7e-08 64.7 98 40.8
AUR62027678 Chenopodium quinoa HOM05D001720 ORTHO05D001813 7.4e-08 64.3 262 27.9
Eucgr.D00489 Eucalyptus grandis HOM05D001720 ORTHO05D001813 7.4e-08 64.3 205 31.7
Sp4g16460 Schrenkiella parvula HOM05D001720 ORTHO05D001813 7.4e-08 64.3 205 33.7
BraA05t20100Z Brassica rapa HOM05D001720 ORTHO05D001813 9.7e-08 63.9 211 30.3
Nn1g04416 Nelumbo nucifera HOM05D001720 ORTHO05D001813 1.7e-07 63.2 191 35.6
Oeu041769.1 Olea europaea HOM05D001720 ORTHO05D001813 2.8e-07 62.4 189 31.7
MD10G1279900 Malus domestica HOM05D001720 ORTHO05D001813 3.7e-07 62.0 123 39.8
BcaC02g11471 Brassica carinata HOM05D001720 ORTHO05D001813 1.8e-06 59.7 210 29.0
BolC4t23074H Brassica oleracea HOM05D001720 ORTHO05D001813 1.8e-06 59.7 210 29.0
Dinv16768 Davidia involucrata HOM05D001720 ORTHO05D001813 7.0e-06 57.8 86 43.0


User provided reference genes

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