Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 9.7e-253 876.3 437 100.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 6.5e-140 501.5 766 42.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.6e-138 496.9 767 42.8
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.2e-133 480.7 771 41.9
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 4.2e-131 472.2 771 42.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 7.4e-128 461.5 432 61.3
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 7.5e-104 381.7 341 62.8
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.2e-96 357.8 754 35.8
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.4e-94 350.9 430 50.5
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 8.3e-87 325.1 430 48.1
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.6e-85 320.9 426 48.1
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 5.0e-84 315.8 830 32.8
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.1e-82 310.5 436 47.2
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-80 303.9 429 46.4
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 1.3e-79 301.2 429 45.9
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 7.8e-77 292.0 431 45.7
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 4.7e-74 282.7 432 43.3
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-73 280.8 431 44.1
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 9.8e-72 275.0 430 43.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 7.8e-69 265.4 431 42.5
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 2.3e-68 263.8 431 41.5
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 8.6e-68 261.9 431 41.3
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.6e-67 259.2 432 41.9
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 6.2e-66 255.8 431 42.7
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.2e-64 251.5 431 40.4
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.9e-62 244.2 431 41.5
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 2.8e-58 230.3 259 51.7
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 3.5e-53 213.4 261 51.3
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.9e-51 207.6 436 34.9
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 9.9e-48 195.3 430 34.7
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 4.6e-45 186.4 422 34.4
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.3e-44 184.9 422 34.1
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 3.9e-44 183.3 510 32.5
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.5e-43 181.4 422 33.2
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 3.3e-43 180.3 433 33.9
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 9.6e-43 178.7 431 33.4
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.4e-41 174.1 428 33.4
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.7e-39 167.9 428 31.5
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.7e-39 167.9 430 31.9
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 4.9e-39 166.4 508 30.1
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.1e-38 165.2 429 32.6
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 3.2e-38 163.7 508 29.9
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.2e-37 161.8 464 31.2
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.7e-37 160.6 368 34.5
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.5e-37 160.2 465 30.3
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 3.5e-37 160.2 432 32.4
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 6.0e-37 159.5 430 32.1
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 1.0e-36 158.7 435 32.2
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.3e-36 158.3 436 31.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 2.5e-35 154.1 434 30.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 2.5e-35 154.1 465 30.3
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 3.3e-35 153.7 418 31.1
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 3.3e-35 153.7 448 31.7
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-34 151.8 434 30.0
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.3e-34 151.8 434 31.6
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 3.7e-34 150.2 429 29.8
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 8.1e-34 149.1 431 30.4
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 8.1e-34 149.1 431 29.7
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.1e-33 148.7 434 30.4
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-33 148.3 434 29.7
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 5.3e-33 146.4 413 31.5
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 6.9e-33 146.0 424 29.2
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 9.0e-33 145.6 427 28.3
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 2.0e-32 144.4 420 31.7
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 2.6e-32 144.1 436 31.2
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.6e-32 144.1 432 29.4
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.5e-32 143.3 422 31.5
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 5.8e-32 142.9 383 31.9
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 7.6e-32 142.5 431 29.2
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.6e-32 142.5 385 32.5
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 1.7e-31 141.4 429 30.1
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.2e-31 141.0 422 31.3
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.9e-31 140.6 420 31.2
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 4.9e-31 139.8 438 29.2
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 4.9e-31 139.8 383 31.6
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 8.4e-31 139.0 431 28.8
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 2.5e-30 137.5 425 28.9
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 3.2e-30 137.1 423 29.3
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 4.2e-30 136.7 424 29.0
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 5.5e-30 136.3 430 28.6
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.6e-29 134.8 428 30.1
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 3.9e-28 130.2 422 30.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 5.1e-28 129.8 447 27.3
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.9e-27 127.9 439 28.9
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.3e-27 126.7 433 28.2
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 5.7e-27 126.3 428 29.0
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 7.4e-27 125.9 416 28.8
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.3e-26 125.2 435 29.4
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.3e-26 125.2 429 28.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.3e-26 125.2 391 30.7
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 3.7e-26 123.6 356 29.8
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 6.3e-26 122.9 489 26.6
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 8.2e-26 122.5 364 31.6
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 8.2e-26 122.5 417 27.6
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.4e-25 121.7 343 29.7
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 4.1e-25 120.2 462 27.3
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.2e-24 118.6 433 27.5
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 5.9e-24 116.3 263 31.6
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-23 115.2 693 24.0
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 2.2e-23 114.4 429 27.5
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.1e-22 112.1 374 28.9
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 1.4e-22 111.7 218 36.7
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 3.2e-22 110.5 400 27.5
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.2e-22 110.2 441 26.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 4.2e-22 110.2 377 29.4
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 4.2e-22 110.2 409 26.2
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.5e-22 109.8 433 27.3
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 7.2e-22 109.4 324 31.5
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 9.3e-22 109.0 369 28.2
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.1e-21 107.8 428 27.3
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.1e-21 107.8 388 26.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 4.6e-21 106.7 345 27.5
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.3e-20 105.1 342 27.8
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 5.1e-20 103.2 290 28.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 6.7e-20 102.8 429 24.9
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.9e-19 101.3 169 35.5
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.3e-19 100.1 346 28.3
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-18 98.6 155 42.6
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 8.2e-18 95.9 346 28.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 4.1e-17 93.6 462 25.3
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 1.2e-16 92.0 419 25.1
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 3.8e-15 87.0 123 45.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.2e-13 82.0 394 27.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.3e-12 77.8 76 52.6
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.3e-12 77.8 76 52.6
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.3e-12 77.8 73 54.8
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 5.1e-12 76.6 78 50.0
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.5e-11 74.3 97 46.4
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.7e-11 73.2 73 54.8
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 5.7e-11 73.2 101 42.6
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.7e-10 71.6 94 43.6
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 2.2e-10 71.2 76 44.7
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.7e-10 70.5 186 30.6
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 7.7e-08 62.8 72 45.8
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 7.7e-08 62.8 115 36.5
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 8.5e-07 59.3 119 34.5
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.1e-06 58.9 86 39.5
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.9e-06 58.2 119 33.6
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 4.2e-06 57.0 182 30.8
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 4.2e-06 57.0 119 32.8
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 7.2e-06 56.2 67 53.7


User provided reference genes

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