Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02981 Brassica carinata HOM05D001439 ORTHO05D002726 3.9e-44 181.0 88 100.0
AL1G42050 Arabidopsis lyrata HOM05D001439 ORTHO05D002726 6.5e-15 84.0 59 69.5
Sp1g24700 Schrenkiella parvula HOM05D001439 ORTHO05D002726 4.2e-14 81.3 52 73.1
AT1G28420 Arabidopsis thaliana HOM05D001439 ORTHO05D002726 1.2e-13 79.7 59 66.1
Thhalv10006543m.g Eutrema salsugineum HOM05D001439 ORTHO05D002726 2.1e-13 79.0 52 71.2
BcaB03g12103 Brassica carinata HOM05D001439 ORTHO05D002726 2.7e-13 78.6 54 75.9
CARHR027930 Cardamine hirsuta HOM05D001439 ORTHO05D002726 3.6e-13 78.2 59 66.1
BcaC01g00060 Brassica carinata HOM05D001439 ORTHO05D002726 1.4e-12 76.3 51 78.4
C03p75250 Brassica napus HOM05D001439 ORTHO05D002726 1.4e-12 76.3 51 78.4
BolC3t19784H Brassica oleracea HOM05D001439 ORTHO05D002726 1.4e-12 76.3 51 78.4
BraA08t34505Z Brassica rapa HOM05D001439 ORTHO05D002726 1.4e-12 76.3 51 78.4
Aa31LG6G10940 Aethionema arabicum HOM05D001439 ORTHO05D002726 1.8e-12 75.9 52 69.2
BraA09t39272Z Brassica rapa HOM05D001439 ORTHO05D002726 1.8e-12 75.9 55 70.9
A08p25510 Brassica napus HOM05D001439 ORTHO05D002726 2.3e-12 75.5 51 78.4
A09p37620 Brassica napus HOM05D001439 ORTHO05D002726 3.9e-12 74.7 55 70.9
C05p27430 Brassica napus HOM05D001439 ORTHO05D002726 5.1e-12 74.3 53 71.7
BolC5t31459H Brassica oleracea HOM05D001439 ORTHO05D002726 5.1e-12 74.3 53 71.7
Carub.0001s2690 Capsella rubella HOM05D001439 ORTHO05D002726 1.5e-11 72.8 59 61.0
THA.LOC104812616 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 2.0e-11 72.4 59 59.3
THA.LOC104814231 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 2.5e-11 72.0 59 57.6
Cpa.g.sc27.2 Carica papaya HOM05D001439 ORTHO05D002726 4.1e-09 64.7 53 54.7
Lj4g0015660 Lotus japonicus HOM05D001439 ORTHO05D002726 5.3e-09 64.3 49 61.2
Potri.004G048675 Populus trichocarpa HOM05D001439 ORTHO05D002726 1.2e-08 63.2 42 69.0
Atru.chr10.1798 Acer truncatum HOM05D001439 ORTHO05D002726 2.0e-08 62.4 46 60.9
ClCG01G023260 Citrullus lanatus HOM05D001439 ORTHO05D002726 2.6e-08 62.0 69 47.8
CiPaw.09G063400 Carya illinoinensis HOM05D001439 ORTHO05D002726 3.4e-08 61.6 52 53.8
Oeu056520.3 Olea europaea HOM05D001439 ORTHO05D002726 3.4e-08 61.6 46 58.7
Lj1C693T2 Lonicera japonica HOM05D001439 ORTHO05D002726 4.5e-08 61.2 44 63.6
Manes.17G049300 Manihot esculenta HOM05D001439 ORTHO05D002726 4.5e-08 61.2 42 66.7
Rhsim02G0134900 Rhododendron simsii HOM05D001439 ORTHO05D002726 4.5e-08 61.2 48 60.4
Sabra07G0109800 Salix brachista HOM05D001439 ORTHO05D002726 4.5e-08 61.2 75 45.3
Eucgr.D00596 Eucalyptus grandis HOM05D001439 ORTHO05D002726 5.9e-08 60.8 52 53.8
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 5.9e-08 60.8 41 65.9
Sed0000156 Sechium edule HOM05D001439 ORTHO05D002726 5.9e-08 60.8 46 60.9
PGR004G2384 Punica granatum HOM05D001439 ORTHO05D002726 7.7e-08 60.5 52 53.8
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 1.0e-07 60.1 46 60.9
CsaV3_6G050410 Cucumis sativus L. HOM05D001439 ORTHO05D002726 1.0e-07 60.1 46 60.9
TWI14G1311 Tripterygium wilfordii HOM05D001439 ORTHO05D002726 1.0e-07 60.1 46 60.9
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 1.3e-07 59.7 42 61.9
DCAR_004044 Daucus carota HOM05D001439 ORTHO05D002726 1.3e-07 59.7 40 65.0
Sed0010792 Sechium edule HOM05D001439 ORTHO05D002726 1.3e-07 59.7 46 58.7
arahy.Tifrunner.gnm1.ann1.DG2K05 Arachis hypogaea HOM05D001439 ORTHO05D002726 1.7e-07 59.3 52 51.9
MSTRG.14322 Avicennia marina HOM05D001439 ORTHO05D002726 1.7e-07 59.3 46 58.7
Ciclev10014023m.g Citrus clementina HOM05D001439 ORTHO05D002726 1.7e-07 59.3 46 58.7
Dinv17354 Davidia involucrata HOM05D001439 ORTHO05D002726 1.7e-07 59.3 42 64.3
Eucgr.K01058 Eucalyptus grandis HOM05D001439 ORTHO05D002726 1.7e-07 59.3 46 60.9
Oeu016006.1 Olea europaea HOM05D001439 ORTHO05D002726 1.7e-07 59.3 46 58.7
SGA_v2.0_scaffold34G13921 Striga asiatica HOM05D001439 ORTHO05D002726 1.7e-07 59.3 46 58.7
Actinidia07602 Actinidia chinensis HOM05D001439 ORTHO05D002726 2.2e-07 58.9 42 61.9
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 2.2e-07 58.9 42 61.9
Haze_06382 Corylus avellana HOM05D001439 ORTHO05D002726 2.2e-07 58.9 46 58.7
Glyma.13G235300 Glycine max HOM05D001439 ORTHO05D002726 2.2e-07 58.9 50 52.0
Lj6g0010323 Lotus japonicus HOM05D001439 ORTHO05D002726 2.2e-07 58.9 49 55.1
Phvul.006G182000 Phaseolus vulgaris HOM05D001439 ORTHO05D002726 2.2e-07 58.9 50 52.0
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 2.2e-07 58.9 46 54.3
SGA_v2.0_scaffold70G23491 Striga asiatica HOM05D001439 ORTHO05D002726 2.2e-07 58.9 46 60.9
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 2.2e-07 58.9 50 52.0
EL10Ac9g20819 Beta vulgaris HOM05D001439 ORTHO05D002726 2.9e-07 58.5 46 63.0
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 2.9e-07 58.5 46 56.5
COL.COLO4_31415 Corchorus olitorius HOM05D001439 ORTHO05D002726 2.9e-07 58.5 48 54.2
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 2.9e-07 58.5 46 58.7
Potri.011G057700 Populus trichocarpa HOM05D001439 ORTHO05D002726 2.9e-07 58.5 42 64.3
Sabra04G0030600 Salix brachista HOM05D001439 ORTHO05D002726 2.9e-07 58.5 42 64.3
vmacro15932 Vaccinium macrocarpon HOM05D001439 ORTHO05D002726 2.9e-07 58.5 48 58.3
arahy.Tifrunner.gnm1.ann1.P48F6M Arachis hypogaea HOM05D001439 ORTHO05D002726 3.8e-07 58.2 49 53.1
Phvul.002G232200 Phaseolus vulgaris HOM05D001439 ORTHO05D002726 3.8e-07 58.2 49 55.1
MSTRG.7359 Avicennia marina HOM05D001439 ORTHO05D002726 5.0e-07 57.8 46 56.5
Duzib160G0499 Durio zibethinus HOM05D001439 ORTHO05D002726 5.0e-07 57.8 42 59.5
Gohir.A06G211700 Gossypium hirsutum HOM05D001439 ORTHO05D002726 5.0e-07 57.8 42 59.5
Gohir.D06G209500 Gossypium hirsutum HOM05D001439 ORTHO05D002726 5.0e-07 57.8 42 59.5
Gorai.010G243500 Gossypium raimondii HOM05D001439 ORTHO05D002726 5.0e-07 57.8 42 59.5
MD05G1310200 Malus domestica HOM05D001439 ORTHO05D002726 5.0e-07 57.8 51 51.0
Medtr2g014490 Medicago truncatula HOM05D001439 ORTHO05D002726 5.0e-07 57.8 46 54.3
SHI01532 Sapria himalayana HOM05D001439 ORTHO05D002726 5.0e-07 57.8 42 64.3
Solyc02g077660.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 5.0e-07 57.8 41 61.0
Sopen02g022560 Solanum pennellii HOM05D001439 ORTHO05D002726 5.0e-07 57.8 41 61.0
SGA_v2.0_scaffold22G09664 Striga asiatica HOM05D001439 ORTHO05D002726 5.0e-07 57.8 41 61.0
Thecc.06G181000 Theobroma cacao HOM05D001439 ORTHO05D002726 5.0e-07 57.8 42 59.5
VMungo0251G2748 Vigna mungo HOM05D001439 ORTHO05D002726 5.0e-07 57.8 49 53.1
AUR62038987 Chenopodium quinoa HOM05D001439 ORTHO05D002726 6.5e-07 57.4 46 60.9
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 6.5e-07 57.4 46 54.3
Lalb_Chr16g0384011 Lupinus albus HOM05D001439 ORTHO05D002726 6.5e-07 57.4 42 59.5
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 8.5e-07 57.0 41 61.0
PGR142G1802 Punica granatum HOM05D001439 ORTHO05D002726 8.5e-07 57.0 46 56.5
HPP92_023235 Vanilla planifolia HOM05D001439 ORTHO05D002726 8.5e-07 57.0 45 55.6
HPP92_023278 Vanilla planifolia HOM05D001439 ORTHO05D002726 8.5e-07 57.0 45 55.6
HanXRQChr15g0469531 Helianthus annuus HOM05D001439 ORTHO05D002726 1.1e-06 56.6 64 50.0
TWI38G1102 Tripterygium wilfordii HOM05D001439 ORTHO05D002726 1.1e-06 56.6 42 61.9
Actinidia10999 Actinidia chinensis HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
CSS0016347 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
CSS0047003 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
Cfa000527 Carpinus fangiana HOM05D001439 ORTHO05D002726 1.4e-06 56.2 42 59.5
Dinv06859 Davidia involucrata HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
Gohir.D06G209600 Gossypium hirsutum HOM05D001439 ORTHO05D002726 1.4e-06 56.2 42 57.1
Gorai.010G256900 Gossypium raimondii HOM05D001439 ORTHO05D002726 1.4e-06 56.2 42 57.1
Peaxi162Scf00845g00120 Petunia axillaris HOM05D001439 ORTHO05D002726 1.4e-06 56.2 42 61.9
Sabra11G0039900 Salix brachista HOM05D001439 ORTHO05D002726 1.4e-06 56.2 42 61.9
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
TWI23G0951 Tripterygium wilfordii HOM05D001439 ORTHO05D002726 1.4e-06 56.2 46 56.5
vmacro12346 Vaccinium macrocarpon HOM05D001439 ORTHO05D002726 1.4e-06 56.2 37 67.6
GSVIVG01021113001 Vitis vinifera HOM05D001439 ORTHO05D002726 1.4e-06 56.2 52 50.0
CiPaw.03G181600 Carya illinoinensis HOM05D001439 ORTHO05D002726 1.9e-06 55.8 46 56.5
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 1.9e-06 55.8 46 54.3
Potri.007G135500 Populus trichocarpa HOM05D001439 ORTHO05D002726 1.9e-06 55.8 46 58.7
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 2.5e-06 55.5 37 67.6
Cpa.g.sc83.97 Carica papaya HOM05D001439 ORTHO05D002726 2.5e-06 55.5 37 67.6
Cfa014661 Carpinus fangiana HOM05D001439 ORTHO05D002726 2.5e-06 55.5 46 56.5
Ca_00363_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 2.5e-06 55.5 46 52.2
Haze_13244 Corylus avellana HOM05D001439 ORTHO05D002726 2.5e-06 55.5 46 56.5
Duzib235G0176 Durio zibethinus HOM05D001439 ORTHO05D002726 2.5e-06 55.5 42 57.1
Glyma.07G201200 Glycine max HOM05D001439 ORTHO05D002726 2.5e-06 55.5 37 62.2
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 2.5e-06 55.5 42 59.5
Mapoly0005s0159 Marchantia polymorpha HOM05D001439 ORTHO05D002726 2.5e-06 55.5 38 63.2
Prupe.4G052600 Prunus persica HOM05D001439 ORTHO05D002726 2.5e-06 55.5 46 56.5
QL05p042276 Quercus lobata HOM05D001439 ORTHO05D002726 2.5e-06 55.5 46 54.3
QL05p042429 Quercus lobata HOM05D001439 ORTHO05D002726 2.5e-06 55.5 46 54.3
DCAR_021265 Daucus carota HOM05D001439 ORTHO05D002726 3.2e-06 55.1 37 67.6
Lsat_1_v5_gn_8_133600 Lactuca sativa HOM05D001439 ORTHO05D002726 3.2e-06 55.1 44 61.4
Nitab4.5_0000621g0070 Nicotiana tabacum HOM05D001439 ORTHO05D002726 3.2e-06 55.1 37 64.9
Nitab4.5_0005191g0050 Nicotiana tabacum HOM05D001439 ORTHO05D002726 3.2e-06 55.1 37 64.9
Sc12g0003230 Simmondsia chinensis HOM05D001439 ORTHO05D002726 3.2e-06 55.1 37 67.6
TPR.G19912 Trifolium pratense HOM05D001439 ORTHO05D002726 3.2e-06 55.1 44 56.8
unitig_37.g12875 Utricularia gibba HOM05D001439 ORTHO05D002726 3.2e-06 55.1 46 56.5
arahy.Tifrunner.gnm1.ann1.31J8XM Arachis hypogaea HOM05D001439 ORTHO05D002726 4.2e-06 54.7 47 53.2
arahy.Tifrunner.gnm1.ann1.G6BTL7 Arachis hypogaea HOM05D001439 ORTHO05D002726 4.2e-06 54.7 47 53.2
Dinv29934 Davidia involucrata HOM05D001439 ORTHO05D002726 4.2e-06 54.7 37 64.9
Glyma.13G175200 Glycine max HOM05D001439 ORTHO05D002726 4.2e-06 54.7 49 51.0
MD10G1289100 Malus domestica HOM05D001439 ORTHO05D002726 4.2e-06 54.7 51 51.0
Manes.13G141800 Manihot esculenta HOM05D001439 ORTHO05D002726 4.2e-06 54.7 46 54.3
Psat1g202960 Pisum sativum HOM05D001439 ORTHO05D002726 4.2e-06 54.7 46 52.2
TPR.G11655 Trifolium pratense HOM05D001439 ORTHO05D002726 4.2e-06 54.7 46 52.2
TWI38G1950 Tripterygium wilfordii HOM05D001439 ORTHO05D002726 4.2e-06 54.7 42 57.1
BcaC06g34584 Brassica carinata HOM05D001439 ORTHO05D002726 5.5e-06 54.3 38 65.8
Gohir.A06G211600 Gossypium hirsutum HOM05D001439 ORTHO05D002726 5.5e-06 54.3 42 54.8
Potri.017G016200 Populus trichocarpa HOM05D001439 ORTHO05D002726 5.5e-06 54.3 46 56.5
SMO228G0061 Selaginella moellendorffii HOM05D001439 ORTHO05D005279 5.5e-06 54.3 47 57.4
THA.LOC104826040 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 5.5e-06 54.3 38 65.8
Lj1C697G7 Lonicera japonica HOM05D001439 ORTHO05D002726 7.2e-06 53.9 36 72.2
SMO337G0095 Selaginella moellendorffii HOM05D001439 ORTHO05D002726 7.2e-06 53.9 39 61.5
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 9.4e-06 53.5 42 59.5
Aa31LG5G3060 Aethionema arabicum HOM05D001439 ORTHO05D002726 9.4e-06 53.5 38 63.2
A06p47410 Brassica napus HOM05D001439 ORTHO05D002726 9.4e-06 53.5 37 67.6
C07p26860 Brassica napus HOM05D001439 ORTHO05D002726 9.4e-06 53.5 37 67.6
BolC7t43215H Brassica oleracea HOM05D001439 ORTHO05D002726 9.4e-06 53.5 37 67.6
BraA06t27612Z Brassica rapa HOM05D001439 ORTHO05D002726 9.4e-06 53.5 37 67.6
Cc05_g07750 Coffea canephora HOM05D001439 ORTHO05D002726 9.4e-06 53.5 37 67.6
Migut.H01470 Erythranthe guttata HOM05D001439 ORTHO05D002726 9.4e-06 53.5 45 55.6
HanXRQChr17g0554611 Helianthus annuus HOM05D001439 ORTHO05D002726 9.4e-06 53.5 42 61.9
Nn1g04237 Nelumbo nucifera HOM05D001439 ORTHO05D002726 9.4e-06 53.5 42 57.1
Hund01014 Selenicereus undatus HOM05D001439 ORTHO05D002726 9.4e-06 53.5 42 61.9
TAR626G0121 Trochodendron aralioides HOM05D001439 ORTHO05D002726 9.4e-06 53.5 42 57.1
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 9.4e-06 53.5 40 55.0
GSVIVG01020605001 Vitis vinifera HOM05D001439 ORTHO05D002726 9.4e-06 53.5 37 64.9


User provided reference genes

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