Gene: Lsat_1_v5_gn_8_133600

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_8_133600
  • Transcript Identifier Lsat_1_v5_gn_8_133600.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_8 : 221205600-221213213 : negative

Gene Family Information

  • ID HOM05D001439
  • #Genes/#Species 437/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_8_133600.v5
  • pacid 38950438

Descriptions

  • Description PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT5G44180
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G44180

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44180
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G44180

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G44180

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009057 Homeobox-like domain superfamily
IPR018501 DDT domain
IPR028942 WHIM1 domain
IPR044977 Homeobox-DDT domain protein RLT1/2/3
IPR001356 Homeobox domain
IPR007759 ASXL, HARE-HTH domain
IPR028941 WHIM2 domain
Mapman id Description
12.4.2.3.1 Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.ISWI-CRA complex.component RINGLET/RLT