Gene: AT1G28420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G28420
  • Transcript Identifier AT1G28420.1
  • Gene Type Coding gene
  • Location Chr1 : 9979936-9987460 : positive

Gene Family Information

  • ID HOM05D001439
  • #Genes/#Species 437/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G28420.1
  • symbol HB-1
  • Alias RLT1,RINGLET 1
  • uniprot F4HY56

Descriptions

  • Description homeobox-1
  • Computational description homeobox-1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G44180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IEA
Gene Ontologyregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0010228
IGI
Gene Ontologyvegetative to reproductive phase transition of meristem1
GO:0045892
IMP
Gene Ontologynegative regulation of transcription, DNA-templated1
GO:0048510
IMP
Gene Ontologyregulation of timing of transition from vegetative to reproductive phase1
GO:0009908
IEA
GOA Databaseflower development
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity2
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044977 Homeobox-DDT domain protein RLT1/2/3
IPR001356 Homeobox domain
IPR018501 DDT domain
IPR007759 ASXL, HARE-HTH domain
IPR009057 Homeobox-like domain superfamily
IPR028942 WHIM1 domain
IPR028941 WHIM2 domain
Mapman id Description
12.4.2.3.1 Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.ISWI-CRA complex.component RINGLET/RLT