Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.4e-33 145.6 68 100.0
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 1.1e-22 109.4 50 98.0
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.1e-22 109.4 50 98.0
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 94.0
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 94.0
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 96.0
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 96.0
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 96.0
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 96.0
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 96.0
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 9.4e-22 106.3 50 94.0
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 1.6e-21 105.5 50 96.0
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 2.7e-21 104.8 50 94.0
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 4.7e-21 104.0 50 92.0
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 8.0e-21 103.2 50 92.0
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 8.0e-21 103.2 50 92.0
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.0e-20 102.8 50 90.0
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 1.8e-20 102.1 50 90.0
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 5.2e-20 100.5 50 88.0
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.8e-20 100.1 50 90.0
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 6.8e-20 100.1 50 90.0
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 1.5e-19 99.0 50 88.0
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 2.0e-19 98.6 50 84.0
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 2.0e-19 98.6 50 84.0
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 2.6e-19 98.2 50 86.0
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 2.6e-19 98.2 50 86.0
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 3.4e-19 97.8 50 86.0
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 3.4e-19 97.8 50 86.0
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 5.7e-19 97.1 50 84.0
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.7e-19 97.1 50 84.0
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 5.7e-19 97.1 50 82.0
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 5.7e-19 97.1 50 80.0
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 7.5e-19 96.7 50 86.0
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 7.5e-19 96.7 49 85.7
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 7.5e-19 96.7 50 82.0
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 9.7e-19 96.3 50 84.0
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 9.7e-19 96.3 50 84.0
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 9.7e-19 96.3 50 80.0
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 9.7e-19 96.3 50 84.0
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.3e-18 95.9 50 84.0
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.3e-18 95.9 50 80.0
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 1.3e-18 95.9 50 84.0
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.3e-18 95.9 50 80.0
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.7e-18 95.5 50 84.0
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.7e-18 95.5 50 84.0
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.7e-18 95.5 50 80.0
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 2.2e-18 95.1 50 80.0
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 2.2e-18 95.1 50 84.0
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 2.2e-18 95.1 50 80.0
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 82.0
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 82.0
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 82.0
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 82.0
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 78.0
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 82.0
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 2.8e-18 94.7 50 82.0
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 3.7e-18 94.4 50 80.0
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 3.7e-18 94.4 50 80.0
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 4.8e-18 94.0 50 80.0
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 4.8e-18 94.0 50 82.0
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 4.8e-18 94.0 50 84.0
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 4.8e-18 94.0 50 84.0
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 4.8e-18 94.0 50 80.0
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 6.3e-18 93.6 50 82.0
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 6.3e-18 93.6 50 80.0
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 6.3e-18 93.6 50 80.0
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 6.3e-18 93.6 50 78.0
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 80.0
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 80.0
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 78.0
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 78.0
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 78.0
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 82.0
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 82.0
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 82.0
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 8.3e-18 93.2 50 80.0
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.1e-17 92.8 50 80.0
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-17 92.8 50 82.0
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-17 92.8 50 82.0
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 1.1e-17 92.8 50 80.0
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 1.4e-17 92.4 50 80.0
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 1.4e-17 92.4 50 80.0
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.8e-17 92.0 50 82.0
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.8e-17 92.0 50 80.0
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.8e-17 92.0 50 80.0
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 1.8e-17 92.0 50 80.0
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 1.8e-17 92.0 50 80.0
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 2.4e-17 91.7 50 80.0
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.4e-17 91.7 50 78.0
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 3.1e-17 91.3 50 82.0
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 3.1e-17 91.3 50 78.0
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.1e-17 90.9 50 80.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 4.1e-17 90.9 50 78.0
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 5.3e-17 90.5 50 80.0
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 5.3e-17 90.5 50 78.0
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 5.3e-17 90.5 50 78.0
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 5.3e-17 90.5 50 78.0
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 7.0e-17 90.1 50 78.0
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 7.0e-17 90.1 50 80.0
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 7.0e-17 90.1 50 78.0
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.0e-17 90.1 50 78.0
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 7.0e-17 90.1 50 78.0
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 7.0e-17 90.1 50 80.0
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 9.1e-17 89.7 50 80.0
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 9.1e-17 89.7 50 78.0
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 9.1e-17 89.7 50 76.0
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.2e-16 89.4 50 78.0
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 2.0e-16 88.6 50 78.0
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 2.0e-16 88.6 50 78.0
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.0e-16 88.6 50 76.0
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.0e-16 88.6 50 76.0
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 2.0e-16 88.6 50 78.0
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 2.7e-16 88.2 47 83.0
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 3.5e-16 87.8 50 78.0
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.5e-16 87.8 50 78.0
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 4.5e-16 87.4 50 76.0
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 4.5e-16 87.4 50 76.0
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 5.9e-16 87.0 50 74.0
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 5.9e-16 87.0 50 76.0
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 1.7e-15 85.5 48 77.1
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 2.2e-15 85.1 50 74.0
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 1.1e-14 82.8 50 72.0
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-14 82.4 48 77.1
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 2.1e-13 78.6 50 72.0
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.7e-13 78.2 48 70.8
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 2.3e-12 75.1 50 64.0
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 4.1e-09 64.3 50 56.0
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 1.7e-07 58.9 51 52.9
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 1.7e-07 58.9 48 64.6


User provided reference genes

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