Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.9e-119 432.6 221 100.0
BraA09t38468Z Brassica rapa HOM05D001285 ORTHO05D000199 2.6e-44 183.0 118 78.8
BcaC05g30530 Brassica carinata HOM05D001285 ORTHO05D000199 9.5e-39 164.5 118 73.7
C05p38640 Brassica napus HOM05D001285 ORTHO05D000199 9.5e-39 164.5 118 73.7
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 7.5e-36 154.8 118 72.0
BcaNung03065 Brassica carinata HOM05D001285 ORTHO05D000199 7.5e-36 154.8 118 72.0
BolC5t32604H Brassica oleracea HOM05D001285 ORTHO05D000199 6.4e-35 151.8 118 68.6
C04p20750 Brassica napus HOM05D001285 ORTHO05D000199 1.4e-34 150.6 142 58.5
C01p39770 Brassica napus HOM05D001285 ORTHO05D000199 1.8e-34 150.2 118 67.8
BolC4t23605H Brassica oleracea HOM05D001285 ORTHO05D000199 2.0e-33 146.7 129 62.0
BcaC02g11078 Brassica carinata HOM05D001285 ORTHO05D000199 3.3e-31 139.4 115 67.0
C06p15920 Brassica napus HOM05D001285 ORTHO05D000199 8.0e-30 134.8 156 52.6
C02p37580 Brassica napus HOM05D001285 ORTHO05D015508 1.0e-29 134.4 156 52.6
BcaC08g44187 Brassica carinata HOM05D001285 ORTHO05D000199 1.4e-29 134.0 138 56.5
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-20 104.4 54 96.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.2e-20 104.4 54 96.3
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-20 104.4 54 98.1
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.2e-20 104.4 54 96.3
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 96.3
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-20 104.0 54 94.4
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 4.4e-20 102.4 54 96.3
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.4e-20 102.4 54 96.3
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-20 102.4 54 96.3
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-20 102.4 54 96.3
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 4.4e-20 102.4 54 96.3
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.7e-19 100.5 54 92.6
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-18 97.4 54 90.7
BcaC05g25966 Brassica carinata HOM05D001285 ORTHO05D000199 5.4e-18 95.5 138 42.0
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 7.8e-17 91.7 55 89.1
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.0e-16 91.3 55 87.3
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 5.1e-16 89.0 55 87.3
Sp1g37620 Schrenkiella parvula HOM05D001285 ORTHO05D000199 3.3e-15 86.3 119 50.4
BolC3t14898H Brassica oleracea HOM05D001285 ORTHO05D000199 5.6e-15 85.5 50 80.0
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.1e-14 83.6 54 79.6
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.4e-13 80.9 55 81.8
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.4e-13 80.9 55 81.8
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.4e-13 80.9 49 75.5
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.3e-13 80.1 54 79.6
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 2.3e-13 80.1 55 81.8
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 5.2e-13 79.0 54 77.8
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 5.2e-13 79.0 54 77.8
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 5.2e-13 79.0 54 77.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 5.2e-13 79.0 54 77.8
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 6.8e-13 78.6 53 81.1
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 8.9e-13 78.2 54 77.8
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.2e-12 77.8 54 77.8
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.2e-12 77.8 54 75.9
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.2e-12 77.8 54 75.9
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.5e-12 77.4 54 75.9
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.5e-12 77.4 54 75.9
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 1.5e-12 77.4 55 80.0
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.0e-12 77.0 54 75.9
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.0e-12 77.0 54 77.8
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 2.6e-12 76.6 54 79.6
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.6e-12 76.6 55 78.2
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.6e-12 76.6 54 77.8
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.6e-12 76.6 54 75.9
C05p19190 Brassica napus HOM05D001285 ORTHO05D000199 3.4e-12 76.3 69 55.1
BolC5t30619H Brassica oleracea HOM05D001285 ORTHO05D000199 3.4e-12 76.3 69 55.1
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 3.4e-12 76.3 56 80.4
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.4e-12 76.3 59 74.6
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 4.4e-12 75.9 54 75.9
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 4.4e-12 75.9 54 75.9
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 5.8e-12 75.5 54 74.1
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 5.8e-12 75.5 53 77.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 5.8e-12 75.5 54 75.9
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 7.6e-12 75.1 54 72.2
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 9.9e-12 74.7 44 81.8
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 9.9e-12 74.7 53 75.5
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 75.9
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.3e-11 74.3 55 78.2
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.3e-11 74.3 54 72.2
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.7e-11 73.9 52 75.0
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.7e-11 73.9 54 75.9
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.7e-11 73.9 54 72.2
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.2e-11 73.6 54 74.1
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 2.2e-11 73.6 54 74.1
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 2.9e-11 73.2 44 79.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 2.9e-11 73.2 45 77.8
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-11 73.2 45 77.8
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 2.9e-11 73.2 44 79.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.9e-11 73.2 54 74.1
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 3.8e-11 72.8 54 74.1
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 3.8e-11 72.8 51 76.5
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 4.9e-11 72.4 54 75.9
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 4.9e-11 72.4 53 73.6
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 6.4e-11 72.0 53 73.6
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 6.4e-11 72.0 54 72.2
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.1e-10 71.2 54 70.4
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.4e-10 70.9 37 89.2
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.4e-10 70.9 55 76.4
Sp5g20050 Schrenkiella parvula HOM05D001285 ORTHO05D000199 1.4e-10 70.9 124 43.5
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.9e-10 70.5 53 69.8
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.9e-10 70.5 56 73.2
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.9e-10 70.5 56 73.2
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.9e-10 70.5 54 66.7
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.9e-10 70.5 54 70.4
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.4e-10 70.1 53 73.6
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 3.2e-10 69.7 50 76.0
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 3.2e-10 69.7 50 76.0
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 4.1e-10 69.3 54 66.7
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 4.1e-10 69.3 54 72.2
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 4.1e-10 69.3 50 70.0
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 4.1e-10 69.3 50 70.0
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.1e-10 68.6 54 68.5
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 7.1e-10 68.6 54 68.5
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 7.1e-10 68.6 54 64.8
C03p03120 Brassica napus HOM05D001285 ORTHO05D000199 9.2e-10 68.2 97 44.3
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 9.2e-10 68.2 54 64.8
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 9.2e-10 68.2 54 64.8
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.2e-09 67.8 54 68.5
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.2e-09 67.8 54 68.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.2e-09 67.8 50 68.0
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 2.1e-09 67.0 52 69.2
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.7e-09 66.6 54 66.7
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 2.7e-09 66.6 50 72.0
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.5e-09 66.2 54 66.7
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 3.5e-09 66.2 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 4.6e-09 65.9 54 59.3
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 4.6e-09 65.9 52 69.2
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 4.6e-09 65.9 52 69.2
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.0e-08 64.7 54 68.5
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.3e-08 64.3 37 83.8
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.3e-08 64.3 54 66.7
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.3e-08 64.3 52 65.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.3e-08 64.3 52 65.4
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.3e-08 64.3 52 65.4
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.3e-08 63.5 32 93.8
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.0e-08 63.2 43 65.1
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 3.0e-08 63.2 53 62.3
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 5.1e-08 62.4 31 96.8
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 6.6e-08 62.0 36 77.8
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.6e-08 62.0 55 63.6
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 8.6e-08 61.6 54 59.3
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.6e-08 61.6 61 47.5
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 8.6e-08 61.6 37 75.7
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.1e-07 61.2 31 93.5
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.1e-07 61.2 37 75.7
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 4.3e-07 59.3 86 47.7
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.6e-07 58.9 37 73.0
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.6e-07 58.9 37 73.0
C04p02540 Brassica napus HOM05D001285 ORTHO05D021957 9.6e-07 58.2 30 83.3
BolC4t21897H Brassica oleracea HOM05D001285 ORTHO05D021957 9.6e-07 58.2 30 83.3
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.6e-06 57.4 52 57.7
BcaC02g12762 Brassica carinata HOM05D001285 ORTHO05D021957 2.8e-06 56.6 30 80.0
SpUn1586_0010 Schrenkiella parvula HOM05D001285 ORTHO05D000199 2.8e-06 56.6 61 55.7
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-06 55.8 37 67.6
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-06 55.8 37 67.6
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-06 55.8 37 67.6
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-06 55.8 37 67.6
A07p07280 Brassica napus HOM05D000073 ORTHO05D000199 4.7e-06 55.8 127 33.9
BcaC07g41747 Brassica carinata HOM05D001285 ORTHO05D000199 6.2e-06 55.5 131 32.1


User provided reference genes

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