Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-241 839.0 407 100.0
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.4e-221 772.7 416 92.3
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.5e-220 769.2 427 90.9
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 3.0e-208 728.4 442 84.2
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.5e-207 726.1 419 88.1
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 8.2e-206 720.3 417 86.1
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 4.5e-204 714.5 419 86.4
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 2.3e-192 675.6 415 81.2
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 4.0e-192 674.9 416 80.8
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 7.5e-191 670.6 415 80.0
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 8.3e-190 667.2 400 81.8
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.6e-188 662.9 412 79.1
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 3.5e-188 661.8 416 77.4
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.3e-187 659.8 414 78.7
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 8.6e-187 657.1 413 78.7
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 1.1e-186 656.8 420 78.6
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 4.7e-185 651.4 413 78.5
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 6.1e-185 651.0 418 78.2
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 5.8e-183 644.4 403 78.9
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 8.1e-169 597.4 415 70.8
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 9.6e-154 547.4 412 65.0
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 2.1e-153 546.2 412 65.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.2e-151 540.4 414 64.3
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 9.9e-151 537.3 412 64.1
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.2e-148 530.4 414 64.0
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.1e-146 523.9 413 62.5
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 7.3e-146 521.2 414 64.0
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.3e-145 520.4 410 62.9
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.2e-143 513.8 414 61.8
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.5e-143 513.5 413 61.5
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.0e-143 513.1 408 62.0
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 2.6e-143 512.7 413 62.5
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.6e-143 512.7 401 62.1
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 7.6e-143 511.1 407 61.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 1.7e-142 510.0 413 60.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.7e-142 510.0 413 61.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 2.2e-142 509.6 406 61.3
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 4.9e-142 508.4 410 62.9
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 8.4e-142 507.7 414 59.9
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.1e-141 507.3 407 61.2
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.9e-141 506.5 413 60.3
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 1.9e-141 506.5 406 61.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.9e-141 506.5 422 60.9
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.9e-141 506.5 405 61.7
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 4.2e-141 505.4 382 64.1
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 2.1e-140 503.1 400 61.5
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 2.7e-140 502.7 411 59.9
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 2.7e-140 502.7 409 61.4
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 3.5e-140 502.3 409 61.9
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.5e-140 502.3 407 59.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-139 500.0 408 60.8
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.0e-139 499.2 339 75.5
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 3.9e-139 498.8 414 59.7
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.1e-138 497.3 407 60.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 2.5e-138 496.1 419 59.7
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 2.5e-138 496.1 407 61.2
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 5.6e-138 495.0 382 62.0
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 9.6e-138 494.2 417 58.0
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 9.6e-138 494.2 398 60.6
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.1e-137 493.0 417 60.0
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 2.8e-137 492.7 404 59.9
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 2.8e-137 492.7 414 58.5
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 3.7e-137 492.3 415 60.0
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 8.1e-137 491.1 410 59.8
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.1e-136 490.7 411 58.9
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.1e-136 490.7 408 61.5
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.4e-136 489.6 410 60.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 2.4e-136 489.6 381 62.7
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 6.9e-136 488.0 411 56.7
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.0e-136 487.6 401 61.1
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 4.5e-135 485.3 456 54.6
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.3e-134 483.8 411 58.4
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.1e-133 480.7 364 63.7
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.9e-133 479.9 460 54.3
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 5.5e-133 478.4 384 61.5
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 3.5e-132 475.7 412 57.3
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.0e-132 474.9 411 58.4
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 6.0e-132 474.9 411 58.9
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.3e-131 473.8 407 56.3
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 5.1e-131 471.9 405 58.3
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.5e-130 470.3 412 57.3
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 9.6e-130 467.6 416 56.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.0e-126 457.6 299 71.6
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.2e-126 456.4 340 62.6
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 2.9e-126 456.1 342 62.9
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 9.3e-125 451.1 367 58.6
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 9.3e-125 451.1 407 56.8
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 9.3e-125 451.1 403 54.1
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.2e-124 450.7 344 61.9
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.6e-124 450.3 373 61.7
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.0e-120 434.5 373 58.4
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.6e-116 423.7 367 58.3
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.7e-116 422.9 367 58.3
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 3.9e-115 419.1 415 53.0
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 5.1e-115 418.7 440 50.7
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 6.7e-115 418.3 337 58.5
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.5e-111 405.6 410 54.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.0e-110 404.4 421 50.1
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.3e-107 393.3 310 63.2
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 4.4e-106 389.0 422 48.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 7.4e-106 388.3 383 52.2
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-105 385.6 408 51.7
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 6.3e-105 385.2 370 51.9
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-104 384.4 371 52.0
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.5e-103 380.6 320 58.1
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 8.5e-102 374.8 336 58.9
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.5e-102 374.8 357 55.5
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.7e-100 369.8 336 58.6
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 4.7e-100 369.0 395 48.1
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 5.2e-99 365.5 409 47.2
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.5e-95 352.8 373 50.9
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.5e-93 346.7 309 55.7
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-89 332.0 247 64.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.1e-88 331.3 283 55.1
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 9.1e-88 328.2 446 43.0
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.7e-87 325.1 411 46.2
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.2e-84 317.8 251 65.7
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 5.2e-83 312.4 263 60.1
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.2e-79 301.2 255 58.8
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.3e-77 293.1 416 40.4
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.3e-73 281.2 199 64.8
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.9e-73 279.3 272 54.8
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-71 274.6 319 48.0
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 7.8e-71 271.9 167 79.6
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.7e-70 270.8 199 62.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-65 252.3 199 62.8
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.3e-65 251.9 199 63.8
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.9e-62 243.0 391 38.1
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-61 240.4 202 60.4
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 3.6e-60 236.5 296 41.6
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 3.1e-51 206.8 154 60.4
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-50 204.9 168 61.9
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 3.2e-48 196.8 251 45.0
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-43 181.8 150 58.7
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-40 169.1 123 66.7
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-40 169.1 123 66.7
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-40 169.1 123 66.7
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.8e-39 165.6 123 65.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 6.6e-38 162.5 114 66.7
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-37 161.0 179 47.5
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-31 141.7 96 68.8
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.0e-31 139.4 100 64.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.5e-26 124.8 73 76.7
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-24 117.5 74 70.3
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 7.1e-24 115.9 86 61.6
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-21 107.8 62 75.8
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 6.0e-15 86.3 60 60.0
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.1e-11 73.6 43 67.4
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-10 71.6 73 52.1
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 8.4e-09 65.9 47 70.2
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-07 61.2 110 38.2
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 1.0e-06 58.9 324 23.1
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 1.8e-06 58.2 36 72.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 6.7e-06 56.2 67 40.3


User provided reference genes

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