Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51823 Brassica carinata HOM05D004447 ORTHO05D018696 6.6e-69 263.8 128 100.0
BolC9t59746H Brassica oleracea HOM05D004447 ORTHO05D018696 2.1e-67 258.8 128 97.7
C02p60370 Brassica napus HOM05D004447 ORTHO05D018696 8.1e-67 256.9 128 96.9
BolC2t12092H Brassica oleracea HOM05D004447 ORTHO05D018696 8.1e-67 256.9 128 96.9
C01p08700 Brassica napus HOM05D004447 ORTHO05D018696 7.1e-63 243.8 128 94.5
A09p26680 Brassica napus HOM05D004447 ORTHO05D005973 1.6e-30 136.3 136 55.9
BcaC04g21255 Brassica carinata HOM05D004447 ORTHO05D005973 2.3e-29 132.5 136 54.4
C09p33790 Brassica napus HOM05D004447 ORTHO05D005973 2.3e-29 132.5 136 54.4
BolC9t56215H Brassica oleracea HOM05D004447 ORTHO05D005973 2.3e-29 132.5 136 54.4
Sp6g04850 Schrenkiella parvula HOM05D004447 ORTHO05D005973 2.3e-29 132.5 132 53.8
BraA09t38238Z Brassica rapa HOM05D004447 ORTHO05D005973 4.8e-27 124.8 137 50.4
Thhalv10029404m.g Eutrema salsugineum HOM05D004447 ORTHO05D005973 4.8e-27 124.8 118 54.2
BcaB01g01767 Brassica carinata HOM05D004447 ORTHO05D005973 3.8e-24 115.2 135 51.1
CARHR253540 Cardamine hirsuta HOM05D004447 ORTHO05D005973 2.5e-23 112.5 152 46.7
Carub.0006s3195 Capsella rubella HOM05D004447 ORTHO05D005973 9.4e-23 110.5 121 49.6
AT4G12620 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 1.8e-21 106.3 129 48.1
AL6G47620 Arabidopsis lyrata HOM05D004447 ORTHO05D005973 6.7e-21 104.4 123 48.0
Aa31LG9G10020 Aethionema arabicum HOM05D004447 ORTHO05D005973 8.8e-21 104.0 114 46.5
COL.COLO4_24890 Corchorus olitorius HOM05D004447 ORTHO05D005973 2.0e-20 102.8 132 42.4
AT4G14700 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 2.6e-20 102.4 121 47.9
Nitab4.5_0005731g0030 Nicotiana tabacum HOM05D004447 ORTHO05D005973 5.7e-20 101.3 134 38.8
MD03G1176600 Malus domestica HOM05D004447 ORTHO05D005973 9.7e-20 100.5 134 42.5
Gorai.004G019600 Gossypium raimondii HOM05D004447 ORTHO05D005973 1.7e-19 99.8 107 46.7
Gohir.A08G013660 Gossypium hirsutum HOM05D004447 ORTHO05D005973 3.7e-19 98.6 107 46.7
Peaxi162Scf00862g00001 Petunia axillaris HOM05D004447 ORTHO05D005973 3.7e-19 98.6 132 40.2
Nitab4.5_0000023g0270 Nicotiana tabacum HOM05D004447 ORTHO05D005973 4.8e-19 98.2 103 43.7
EL10Ac4g10265 Beta vulgaris HOM05D004447 ORTHO05D005973 8.2e-19 97.4 101 44.6
EL10Ac4g10281 Beta vulgaris HOM05D004447 ORTHO05D005973 8.2e-19 97.4 101 44.6
CAN.G289.50 Capsicum annuum HOM05D004447 ORTHO05D005973 8.2e-19 97.4 125 39.2
Thecc.09G232100 Theobroma cacao HOM05D004447 ORTHO05D005973 8.2e-19 97.4 140 37.9
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 1.1e-18 97.1 99 49.5
Hund07518 Selenicereus undatus HOM05D004447 ORTHO05D005973 1.4e-18 96.7 101 44.6
Lsat_1_v5_gn_2_97601 Lactuca sativa HOM05D004447 ORTHO05D005973 1.8e-18 96.3 105 45.7
PGSC0003DMG401012812 Solanum tuberosum HOM05D004447 ORTHO05D005973 1.8e-18 96.3 133 38.3
Solyc03g006420.4 Solanum lycopersicum HOM05D004447 ORTHO05D005973 3.1e-18 95.5 133 37.6
Sopen03g002430 Solanum pennellii HOM05D004447 ORTHO05D005973 3.1e-18 95.5 133 37.6
TPR.G3376 Trifolium pratense HOM05D004447 ORTHO05D005973 4.1e-18 95.1 101 48.5
Medtr8g099640 Medicago truncatula HOM05D004447 ORTHO05D005973 5.3e-18 94.7 99 48.5
Gohir.D08G024200 Gossypium hirsutum HOM05D004447 ORTHO05D005973 7.0e-18 94.4 152 38.8
THA.LOC104799099 Tarenaya hassleriana HOM05D004447 ORTHO05D005973 9.1e-18 94.0 119 42.9
Duzib170G0888 Durio zibethinus HOM05D004447 ORTHO05D005973 1.2e-17 93.6 132 35.6
AUR62019289 Chenopodium quinoa HOM05D004447 ORTHO05D005973 1.6e-17 93.2 119 41.2
AUR62000111 Chenopodium quinoa HOM05D004447 ORTHO05D005973 4.5e-17 91.7 133 39.8
Cpa.g.sc84.65 Carica papaya HOM05D004447 ORTHO05D005973 7.7e-17 90.9 103 41.7
MBI01_g18890_MAGBIO Magnolia biondii HOM05D004447 ORTHO05D005973 7.7e-17 90.9 99 46.5
Prupe.4G246200 Prunus persica HOM05D004447 ORTHO05D005973 1.0e-16 90.5 135 40.0
Sabra09G0039600 Salix brachista HOM05D004447 ORTHO05D005973 1.3e-16 90.1 133 36.1
Haze_23126 Corylus avellana HOM05D004447 ORTHO05D005973 1.7e-16 89.7 137 36.5
Glyma.13G340100 Glycine max HOM05D004447 ORTHO05D005973 1.7e-16 89.7 104 46.2
HPP92_009576 Vanilla planifolia HOM05D004447 ORTHO05D005973 1.7e-16 89.7 141 39.0
GSVIVG01025279001 Vitis vinifera HOM05D004447 ORTHO05D005973 2.2e-16 89.4 104 41.3
Aqoxy5G02409 Aquilegia oxysepala HOM05D004447 ORTHO05D005973 3.8e-16 88.6 97 43.3
CDE05G2287 Ceratophyllum demersum HOM05D004447 ORTHO05D005973 3.8e-16 88.6 126 40.5
Cc02_g33870 Coffea canephora HOM05D004447 ORTHO05D005973 3.8e-16 88.6 134 38.8
Oeu043298.1 Olea europaea HOM05D004447 ORTHO05D005973 3.8e-16 88.6 141 37.6
CSS0002798 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 5.0e-16 88.2 124 39.5
CSS0013975 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 5.0e-16 88.2 124 39.5
Nn8g41218 Nelumbo nucifera HOM05D004447 ORTHO05D005973 5.0e-16 88.2 132 38.6
CiPaw.13G161800 Carya illinoinensis HOM05D004447 ORTHO05D005973 6.5e-16 87.8 136 37.5
Migut.D00596 Erythranthe guttata HOM05D004447 ORTHO05D005973 6.5e-16 87.8 153 34.0
Glyma.15G034300 Glycine max HOM05D004447 ORTHO05D005973 6.5e-16 87.8 104 45.2
Phvul.L009243 Phaseolus vulgaris HOM05D004447 ORTHO05D005973 6.5e-16 87.8 137 40.9
Psat0s3676g0040 Pisum sativum HOM05D004447 ORTHO05D018696 6.5e-16 87.8 138 38.4
VMungo1080G0814 Vigna mungo HOM05D004447 ORTHO05D005973 6.5e-16 87.8 128 42.2
Potri.009G054300 Populus trichocarpa HOM05D004447 ORTHO05D005973 8.5e-16 87.4 153 32.7
vmacro17434 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 8.5e-16 87.4 133 36.1
Atru.chr3.2739 Acer truncatum HOM05D004447 ORTHO05D005973 1.1e-15 87.0 137 39.4
Cfa009762 Carpinus fangiana HOM05D004447 ORTHO05D005973 1.1e-15 87.0 136 36.0
Ciclev10014192m.g Citrus clementina HOM05D004447 ORTHO05D005973 1.1e-15 87.0 97 40.2
HanXRQChr07g0197501 Helianthus annuus HOM05D004447 ORTHO05D005973 1.1e-15 87.0 137 38.7
Eucgr.J00777 Eucalyptus grandis HOM05D004447 ORTHO05D005973 1.5e-15 86.7 154 37.7
QL01p004967 Quercus lobata HOM05D004447 ORTHO05D005973 1.9e-15 86.3 136 41.2
DCAR_031545 Daucus carota HOM05D004447 ORTHO05D005973 2.5e-15 85.9 112 38.4
FAN06G1152 Fragaria x ananassa HOM05D004447 ORTHO05D005973 2.5e-15 85.9 104 46.2
Rhsim01G0191400 Rhododendron simsii HOM05D004447 ORTHO05D005973 2.5e-15 85.9 134 34.3
Manes.14G002000 Manihot esculenta HOM05D004447 ORTHO05D005973 3.2e-15 85.5 140 35.0
Ca_17467_v3 Cicer arietinum L. HOM05D004447 ORTHO05D005973 4.2e-15 85.1 99 45.5
FvH4_7g17041 Fragaria vesca HOM05D004447 ORTHO05D005973 4.2e-15 85.1 104 45.2
PGR119G1865 Punica granatum HOM05D004447 ORTHO05D005973 4.2e-15 85.1 133 39.1
TAR636G2291 Trochodendron aralioides HOM05D004447 ORTHO05D005973 5.5e-15 84.7 135 38.5
ECA238G3100 Erigeron canadensis HOM05D004447 ORTHO05D005973 7.2e-15 84.3 97 42.3
Lj2C632T3 Lonicera japonica HOM05D004447 ORTHO05D005973 7.2e-15 84.3 153 36.6
Actinidia06336 Actinidia chinensis HOM05D004447 ORTHO05D005973 9.4e-15 84.0 104 42.3
FAN01G0266 Fragaria x ananassa HOM05D004447 ORTHO05D005973 9.4e-15 84.0 101 43.6
FAN03G1122 Fragaria x ananassa HOM05D004447 ORTHO05D005973 9.4e-15 84.0 99 44.4
RcHm_v2.0_Chr3g0490671 Rosa chinensis HOM05D004447 ORTHO05D005973 1.2e-14 83.6 113 41.6
Sc16g0011520 Simmondsia chinensis HOM05D004447 ORTHO05D005973 1.2e-14 83.6 152 36.2
vmacro12587 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 1.2e-14 83.6 134 36.6
arahy.Tifrunner.gnm1.ann1.1VP9U3 Arachis hypogaea HOM05D004447 ORTHO05D005973 1.6e-14 83.2 138 34.8
arahy.Tifrunner.gnm1.ann1.M4FG4U Arachis hypogaea HOM05D004447 ORTHO05D005973 1.6e-14 83.2 138 34.8
Lj3g0019316 Lotus japonicus HOM05D004447 ORTHO05D005973 1.6e-14 83.2 136 39.0
CANSAT54G1530 Cannabis sativa HOM05D004447 ORTHO05D005973 2.1e-14 82.8 154 37.0
Dinv22185 Davidia involucrata HOM05D004447 ORTHO05D005973 2.7e-14 82.4 134 35.1
TWI32G0348 Tripterygium wilfordii HOM05D004447 ORTHO05D005973 3.6e-14 82.0 132 34.8
Zm00001eb374440 Zea mays HOM05D004447 ORTHO05D005973 3.6e-14 82.0 99 38.4
ATR0605G286 Amborella trichopoda HOM05D004447 ORTHO05D005973 4.7e-14 81.6 136 37.5
Hma1.2p1_0571F.1_g180890 Hydrangea macrophylla HOM05D004447 ORTHO05D005973 8.0e-14 80.9 105 38.1
Hma1.2p1_0571F.1_g180900 Hydrangea macrophylla HOM05D004447 ORTHO05D005973 8.0e-14 80.9 105 38.1
SGA_v2.0_scaffold247G44874 Striga asiatica HOM05D004447 ORTHO05D005973 8.0e-14 80.9 138 34.8
unitig_0.g298 Utricularia gibba HOM05D004447 ORTHO05D005973 1.0e-13 80.5 154 37.7
Lalb_Chr24g0397081 Lupinus albus HOM05D004447 ORTHO05D005973 1.8e-13 79.7 113 41.6
MSTRG.21381 Avicennia marina HOM05D004447 ORTHO05D005973 2.3e-13 79.3 132 34.8
PSO302G0234 Papaver somniferum HOM05D004447 ORTHO05D005973 4.4e-12 75.1 134 33.6
PSO170G1822 Papaver somniferum HOM05D004447 ORTHO05D005973 5.7e-12 74.7 134 33.6
SMO145G0037 Selaginella moellendorffii HOM05D004447 ORTHO05D005973 5.7e-12 74.7 137 37.2
Zm00001eb278360 Zea mays HOM05D004447 ORTHO05D005973 5.7e-12 74.7 128 33.6
PSO455G0096 Papaver somniferum HOM05D004447 ORTHO05D005973 9.8e-12 73.9 146 32.9
ClCG08G000100 Citrullus lanatus HOM05D004447 ORTHO05D005973 1.8e-10 69.7 111 36.9
Mapoly0041s0101 Marchantia polymorpha HOM05D004447 ORTHO05D005973 2.4e-10 69.3 154 31.8
SHI27486 Sapria himalayana HOM05D004447 ORTHO05D005973 3.1e-10 68.9 135 32.6
GSVIVG01025457001 Vitis vinifera HOM05D004447 ORTHO05D005973 5.4e-10 68.2 88 39.8
CBR_g41485 Chara braunii HOM05D004447 ORTHO05D005973 7.0e-10 67.8 129 32.6
CsaV3_3G030760 Cucumis sativus L. HOM05D004447 ORTHO05D005973 9.1e-10 67.4 145 33.8
MELO3C007066.2 Cucumis melo HOM05D004447 ORTHO05D005973 2.7e-09 65.9 111 35.1
Sed0019583 Sechium edule HOM05D004447 ORTHO05D005973 4.5e-09 65.1 143 34.3
Ah.01g003390 Amaranthus hybridus HOM05D004447 ORTHO05D005973 5.9e-09 64.7 39 71.8
Pp3c9_1080 Physcomitrium patens HOM05D004447 ORTHO05D005973 2.5e-07 59.3 115 31.3
Nn2g15473 Nelumbo nucifera HOM05D004447 ORTHO05D029546 1.2e-06 57.0 67 43.3


User provided reference genes

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