Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 0.0e+00 1864.4 935 100.0
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 0.0e+00 1859.7 936 99.9
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 0.0e+00 1778.1 940 95.4
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 0.0e+00 1721.4 942 92.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 0.0e+00 1387.9 761 92.9
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 0.0e+00 1233.4 943 70.5
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 0.0e+00 1233.0 935 69.7
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 0.0e+00 1189.9 937 68.5
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 0.0e+00 1188.7 1022 64.7
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.5e-306 1056.2 1009 59.4
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.1e-305 1052.4 977 60.2
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.2e-304 1047.7 987 60.7
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.5e-303 1046.2 966 60.6
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 8.3e-302 1040.4 974 59.9
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 5.5e-298 1027.7 974 59.9
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.4e-296 1023.1 985 58.6
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 3.4e-295 1018.5 977 58.1
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.8e-288 996.1 1009 56.4
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 3.5e-284 981.9 812 66.9
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 8.0e-281 970.7 959 56.4
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.1e-273 946.0 764 66.8
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 8.9e-272 940.6 918 57.2
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.0e-243 847.4 547 79.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 7.4e-242 841.3 697 66.0
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 5.1e-235 818.5 696 64.1
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.0e-230 804.3 969 48.5
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 6.5e-230 801.6 973 48.6
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.1e-229 800.8 974 47.5
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.4e-229 800.4 976 47.5
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.2e-225 786.6 966 47.6
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 2.0e-223 780.0 944 48.3
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 7.9e-220 768.1 972 46.7
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.4e-219 767.3 967 47.2
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.0e-218 763.5 968 47.2
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.0e-218 763.5 967 46.4
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 5.7e-218 761.9 970 46.8
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.8e-217 759.6 966 46.5
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.4e-216 756.5 966 46.6
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 5.3e-216 755.4 969 47.5
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 2.0e-215 753.4 964 46.6
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.0e-214 751.1 964 46.3
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 1.3e-214 750.7 966 46.1
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 2.2e-214 750.0 991 45.8
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.6e-212 742.7 969 45.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.6e-212 742.7 976 46.2
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 2.3e-211 740.0 971 45.0
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 2.0e-210 736.9 972 45.1
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 2.6e-210 736.5 978 45.0
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.7e-209 733.8 969 45.8
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 3.7e-209 732.6 990 44.1
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 2.0e-207 726.9 985 45.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.3e-206 724.2 964 45.7
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 1.3e-206 724.2 979 43.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.9e-206 723.0 985 44.1
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 5.5e-205 718.8 948 45.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.2e-205 718.4 1003 43.6
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 3.6e-204 716.1 970 44.5
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.8e-203 713.8 968 44.3
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.8e-201 706.4 974 43.8
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 2.8e-201 706.4 968 45.1
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 6.3e-201 705.3 951 44.4
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 8.2e-201 704.9 975 43.4
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.1e-200 704.5 972 44.0
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.1e-200 703.0 974 43.8
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.2e-199 701.0 977 43.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 1.6e-199 700.7 966 44.5
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.6e-199 699.9 981 43.4
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 5.9e-199 698.7 967 44.1
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 2.9e-198 696.4 975 43.7
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.9e-198 696.4 974 44.1
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.8e-198 696.0 967 44.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.2e-197 692.6 968 44.0
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 6.1e-196 688.7 972 44.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.0e-195 688.0 974 43.8
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.4e-195 687.6 972 43.7
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.0e-195 686.0 981 43.7
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.2e-194 684.5 967 44.2
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 7.5e-194 681.8 971 43.2
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 9.8e-194 681.4 992 41.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 9.1e-192 674.9 959 43.6
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.0e-191 673.7 1053 40.6
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.2e-188 664.5 958 43.4
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.2e-188 664.5 967 42.5
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.0e-187 661.4 969 42.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 2.0e-186 657.1 963 42.9
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 8.3e-185 651.7 1007 41.5
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 3.5e-183 646.4 969 42.3
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 2.9e-182 643.3 954 42.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 6.6e-182 642.1 832 46.0
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 4.3e-181 639.4 959 41.8
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 1.6e-180 637.5 970 41.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.4e-179 634.4 968 41.2
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.3e-179 633.6 949 42.1
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 4.7e-172 609.4 854 43.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 7.0e-168 595.5 887 41.3
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.0e-167 594.0 977 38.4
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.6e-164 583.2 832 44.5
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 3.1e-163 580.1 891 41.0
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 6.8e-163 578.9 963 38.7
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.3e-150 537.3 749 43.8
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 8.6e-150 535.4 811 42.0
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 4.8e-140 503.1 766 42.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.9e-139 499.2 867 38.5
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 6.6e-134 482.6 347 72.9
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.9e-129 466.5 755 38.8
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 8.4e-129 465.7 881 38.1
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 7.1e-128 462.6 964 35.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-127 461.8 345 69.3
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 2.1e-124 451.1 873 35.9
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.1e-124 451.1 593 45.5
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.7e-124 450.3 593 45.4
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.1e-124 449.1 662 41.7
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.4e-121 439.1 906 35.0
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 5.7e-117 426.4 692 39.3
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 3.1e-115 420.6 838 34.8
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 2.2e-108 397.9 950 32.0
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.4e-107 395.2 869 35.0
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-105 387.9 790 34.9
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 5.0e-97 360.1 687 35.5
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 7.9e-95 352.8 957 30.7
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.8e-94 351.7 687 34.6
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 3.7e-84 317.4 682 33.7
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.1e-83 315.8 682 33.7
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.4e-83 314.7 526 38.0
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.4e-83 314.7 496 41.1
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 6.1e-79 300.1 208 75.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 2.8e-76 291.2 597 34.8
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.1e-75 286.2 544 34.7
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 2.1e-71 275.0 608 33.4
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 2.3e-70 271.6 354 42.9
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.4e-69 267.7 252 58.7
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 9.8e-69 266.2 261 55.2
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 3.3e-64 251.1 229 61.1
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.9e-62 243.0 367 42.2
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.2e-53 216.1 1192 22.7
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-45 188.7 143 65.7
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 7.5e-45 186.8 267 40.4
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-40 172.2 204 44.1
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-37 162.9 284 34.5
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 4.4e-37 161.0 588 27.6
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 4.9e-36 157.5 191 46.1
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 6.4e-36 157.1 133 63.9
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 1.4e-35 156.0 152 56.6
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-33 147.1 162 55.6
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-32 145.6 151 56.3
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 2.4e-27 128.6 115 59.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 3.6e-23 114.8 88 68.2
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 6.2e-23 114.0 86 68.6
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 8.1e-23 113.6 95 62.1
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-22 113.2 88 67.0
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.4e-22 112.8 322 27.6
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 2.4e-22 112.1 95 61.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 2.4e-22 112.1 95 61.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 5.8e-21 107.5 113 55.8
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 7.6e-21 107.1 118 46.6
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 7.6e-21 107.1 139 46.0
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 2.3e-17 95.5 82 61.0
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 8.7e-17 93.6 113 47.8
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.3e-16 91.7 98 52.0
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 7.4e-16 90.5 87 58.6
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 7.4e-16 90.5 87 58.6
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-15 89.7 112 38.4
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 8.1e-15 87.0 107 43.9
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.4e-14 85.5 153 38.6
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 2.0e-13 82.4 108 45.4
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.4e-12 77.4 81 51.9
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 7.1e-11 73.9 277 25.6
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.2e-10 73.2 153 32.0
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.3e-09 68.9 81 46.9
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.1e-08 66.6 70 41.4
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 2.5e-08 65.5 54 55.6


User provided reference genes

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