Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.0e-72 276.6 134 100.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 8.2e-70 266.9 131 97.7
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 8.2e-70 266.9 129 100.0
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.5e-68 262.7 129 97.7
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.5e-68 262.7 129 97.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 2.1e-65 252.3 123 97.6
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-61 238.0 132 90.2
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.1e-61 238.0 132 90.2
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.1e-61 238.0 132 90.2
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 2.0e-60 235.7 132 89.4
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-59 232.3 123 92.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.7e-38 162.9 80 97.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 4.7e-17 91.7 53 86.8
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 1.1e-16 90.5 53 84.9
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 1.1e-16 90.5 53 84.9
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 1.4e-16 90.1 53 84.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 1.4e-16 90.1 53 84.9
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 1.4e-16 90.1 53 84.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 1.8e-16 89.7 53 83.0
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 1.8e-16 89.7 53 84.9
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 2.3e-16 89.4 53 84.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 5.2e-16 88.2 53 83.0
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 6.8e-16 87.8 53 81.1
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 1.2e-15 87.0 53 83.0
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 3.4e-15 85.5 53 83.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 5.8e-15 84.7 53 77.4
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 3.7e-14 82.0 53 75.5
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 3.7e-14 82.0 53 75.5
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 4.9e-14 81.6 53 75.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 4.9e-14 81.6 53 77.4
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 6.4e-14 81.3 53 73.6
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 6.4e-14 81.3 53 73.6
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 6.4e-14 81.3 53 73.6
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 6.4e-14 81.3 53 73.6
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 6.4e-14 81.3 53 73.6
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 8.4e-14 80.9 53 73.6
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 8.4e-14 80.9 53 73.6
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 8.4e-14 80.9 53 73.6
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 1.4e-13 80.1 53 71.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 1.9e-13 79.7 53 71.7
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 3.2e-13 79.0 53 69.8
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 3.2e-13 79.0 53 73.6
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 3.2e-13 79.0 53 69.8
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 9.2e-13 77.4 53 73.6
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 1.2e-12 77.0 49 75.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 1.2e-12 77.0 53 71.7
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 1.2e-12 77.0 53 73.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 1.2e-12 77.0 53 71.7
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 1.6e-12 76.6 53 71.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 2.1e-12 76.3 53 71.7
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 2.1e-12 76.3 53 69.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 2.7e-12 75.9 53 69.8
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 2.7e-12 75.9 53 69.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 3.5e-12 75.5 53 71.7
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 3.5e-12 75.5 53 71.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 3.5e-12 75.5 53 69.8
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 3.5e-12 75.5 53 69.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 3.5e-12 75.5 53 69.8
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 3.5e-12 75.5 53 69.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 4.6e-12 75.1 53 69.8
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 4.6e-12 75.1 53 69.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 6.0e-12 74.7 53 69.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 6.0e-12 74.7 53 69.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 7.8e-12 74.3 53 69.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 1.0e-11 73.9 53 66.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 1.0e-11 73.9 53 66.0
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 1.3e-11 73.6 53 69.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 1.3e-11 73.6 49 69.4
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-11 73.2 41 85.4
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 1.7e-11 73.2 53 67.9
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 1.7e-11 73.2 53 67.9
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 2.3e-11 72.8 53 69.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 3.0e-11 72.4 53 69.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 3.9e-11 72.0 53 69.8
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 3.9e-11 72.0 53 67.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 5.1e-11 71.6 53 66.0
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 6.6e-11 71.2 53 64.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 8.6e-11 70.9 53 64.2
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 8.6e-11 70.9 53 64.2
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 1.1e-10 70.5 53 64.2
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 1.1e-10 70.5 53 64.2
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.5e-10 70.1 53 64.2
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 1.9e-10 69.7 53 64.2
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 1.9e-10 69.7 54 68.5
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 1.9e-10 69.7 53 67.9
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 2.5e-10 69.3 53 66.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 3.3e-10 68.9 53 62.3
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 4.3e-10 68.6 53 64.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 5.6e-10 68.2 53 67.9
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 9.6e-10 67.4 57 63.2
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 9.6e-10 67.4 54 66.7
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 1.6e-09 66.6 56 69.6
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 1.6e-09 66.6 53 62.3
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.6e-09 66.6 48 68.8
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 2.1e-09 66.2 53 64.2
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 2.1e-09 66.2 53 66.0
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 2.1e-09 66.2 53 64.2
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 2.1e-09 66.2 47 66.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.8e-09 65.9 51 62.7
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 2.8e-09 65.9 53 60.4
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 2.8e-09 65.9 49 65.3
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 2.8e-09 65.9 53 60.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.6e-09 65.5 53 62.3
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.2e-09 64.7 53 60.4
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 8.1e-09 64.3 53 62.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.4e-08 62.8 53 64.2
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.4e-08 62.8 53 64.2
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 2.4e-08 62.8 53 62.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.1e-08 62.4 53 64.2
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 5.2e-08 61.6 53 60.4
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 5.2e-08 61.6 53 56.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 5.2e-08 61.6 53 56.6
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 1.2e-07 60.5 53 62.3
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 1.2e-07 60.5 53 60.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 2.6e-07 59.3 53 56.6
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 7.6e-07 57.8 47 59.6
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 7.6e-07 57.8 49 61.2
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 2.2e-06 56.2 53 58.5
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.8e-06 55.5 53 54.7


User provided reference genes

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