Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.7e-188 662.5 330 100.0
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.9e-147 526.2 278 94.2
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 4.6e-146 521.5 284 91.2
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 6.6e-145 517.7 284 90.5
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-144 516.9 280 93.2
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.9e-144 516.2 284 91.9
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 4.3e-144 515.0 284 91.5
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 5.6e-144 514.6 284 91.2
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 7.3e-144 514.2 284 90.5
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.8e-143 512.3 284 89.8
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.8e-142 509.6 284 89.4
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 6.8e-142 507.7 284 89.8
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 8.9e-142 507.3 284 89.8
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.5e-141 506.5 284 89.4
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.5e-141 506.5 284 89.1
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 2.6e-141 505.8 284 89.1
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 7.5e-141 504.2 284 88.7
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 3.0e-137 492.3 288 86.8
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.5e-136 490.0 282 86.9
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 1.5e-136 490.0 292 82.9
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 4.3e-136 488.4 292 82.5
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 7.3e-136 487.6 284 85.2
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.1e-135 486.1 286 87.4
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 2.1e-135 486.1 305 79.3
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.8e-135 485.7 284 84.9
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 2.8e-135 485.7 292 82.5
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 4.7e-135 485.0 297 80.8
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 6.2e-135 484.6 292 81.8
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 6.2e-135 484.6 308 79.5
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.4e-134 483.4 282 84.8
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.8e-134 483.0 284 84.5
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.8e-134 483.0 280 84.6
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-134 482.6 292 81.5
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.3e-134 482.6 284 83.1
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.3e-134 482.6 292 81.2
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.1e-134 482.3 282 85.5
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 5.2e-134 481.5 278 85.6
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 5.2e-134 481.5 284 82.4
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 6.8e-134 481.1 318 79.6
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 6.8e-134 481.1 292 81.5
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 6.8e-134 481.1 292 81.5
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.9e-134 480.7 292 81.2
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 8.9e-134 480.7 282 83.0
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.2e-133 480.3 286 82.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.5e-133 479.9 278 83.5
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.5e-133 479.9 288 82.6
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 2.0e-133 479.6 282 84.8
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.0e-133 479.6 284 82.7
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 3.4e-133 478.8 282 85.1
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 3.4e-133 478.8 283 83.0
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 3.4e-133 478.8 284 82.7
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 4.4e-133 478.4 284 81.3
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 5.8e-133 478.0 284 83.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 5.8e-133 478.0 278 84.5
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 7.5e-133 477.6 293 81.2
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 7.5e-133 477.6 284 82.4
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.5e-133 477.6 278 85.3
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 9.9e-133 477.2 284 81.7
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 9.9e-133 477.2 278 83.1
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.3e-132 476.9 278 82.4
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 1.3e-132 476.9 292 80.1
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.3e-132 476.9 284 81.3
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 1.7e-132 476.5 287 81.9
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 2.2e-132 476.1 286 81.5
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 2.2e-132 476.1 286 82.5
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 2.2e-132 476.1 280 84.3
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.9e-132 475.7 281 82.9
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 3.7e-132 475.3 284 81.3
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.7e-132 475.3 284 81.7
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 4.9e-132 474.9 284 82.4
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 4.9e-132 474.9 278 84.2
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.4e-132 474.6 284 82.7
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 6.4e-132 474.6 291 79.7
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 8.3e-132 474.2 284 82.4
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.1e-131 473.8 286 80.8
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.1e-131 473.8 289 79.6
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.1e-131 473.8 292 80.5
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.1e-131 473.8 283 81.6
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.1e-131 473.8 313 75.7
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.4e-131 473.4 278 83.5
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.4e-131 473.4 301 77.7
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.4e-131 473.4 289 80.6
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.4e-131 473.4 272 84.2
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.4e-131 473.4 284 81.3
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.4e-131 473.4 290 81.0
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.9e-131 473.0 284 82.0
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.4e-131 472.6 280 82.5
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.2e-131 472.2 282 83.3
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 4.1e-131 471.9 282 82.6
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 5.4e-131 471.5 292 80.1
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.2e-130 470.3 284 81.7
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.2e-130 470.3 284 81.7
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 1.6e-130 469.9 284 81.0
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 1.6e-130 469.9 284 81.0
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 2.1e-130 469.5 284 81.3
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.1e-130 469.5 292 79.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 2.1e-130 469.5 294 79.3
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 3.5e-130 468.8 299 79.3
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 4.6e-130 468.4 284 81.0
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 6.0e-130 468.0 289 79.9
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 1.3e-129 466.8 289 79.9
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 1.3e-129 466.8 292 79.8
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 3.0e-129 465.7 292 78.4
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 2.5e-128 462.6 284 79.2
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.5e-128 462.6 321 72.9
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 4.3e-128 461.8 284 79.6
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 7.3e-128 461.1 271 84.1
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.8e-127 459.1 284 78.9
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.8e-127 459.1 284 78.9
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 2.8e-127 459.1 287 81.5
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.1e-126 457.2 281 81.5
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 4.0e-126 455.3 279 79.2
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.2e-124 449.5 265 83.0
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 9.2e-123 444.1 284 79.6
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.5e-122 442.2 280 78.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.0e-122 441.4 365 64.1
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.0e-121 440.7 300 74.7
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.7e-121 439.9 278 77.7
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.5e-120 436.8 291 77.7
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.5e-120 436.8 291 77.7
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 7.3e-120 434.5 259 81.1
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.1e-119 433.0 259 80.7
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.8e-119 432.6 304 72.7
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 6.2e-119 431.4 284 76.1
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.4e-118 430.3 244 86.9
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 5.3e-118 428.3 328 68.3
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 7.6e-117 424.5 246 84.6
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 7.6e-117 424.5 253 82.2
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.1e-115 420.6 248 83.5
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.2e-114 417.2 259 80.7
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.0e-113 414.1 265 75.8
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 3.9e-113 412.1 286 70.6
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.8e-111 405.2 307 69.1
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.2e-109 400.6 290 64.5
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 4.5e-109 398.7 284 71.5
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 2.4e-107 392.9 284 71.1
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 1.2e-106 390.6 283 72.8
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 6.0e-98 361.7 295 61.0
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.1e-96 357.5 388 53.6
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.4e-94 350.5 221 77.4
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 2.5e-91 339.7 281 65.1
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.2e-90 337.4 204 80.4
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 1.7e-84 317.0 288 60.8
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 7.2e-83 311.6 186 82.3
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 7.2e-83 311.6 186 79.0
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-81 307.8 277 61.0
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 5.9e-77 292.0 278 58.3
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.1e-70 271.2 249 59.4
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-64 249.6 158 74.1
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.2e-63 246.9 200 66.0
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.2e-60 236.9 268 44.8
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 3.1e-46 189.9 199 55.8
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 4.1e-46 189.5 139 70.5
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 4.1e-46 189.5 139 70.5
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 8.0e-34 148.7 131 61.8
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.1e-26 124.0 116 59.5
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 9.8e-24 115.2 72 70.8
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.3e-23 114.8 70 77.1
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.4e-22 111.3 78 70.5
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 3.2e-22 110.2 88 65.9
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 3.2e-22 110.2 88 65.9
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 2.3e-20 104.0 75 69.3
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 6.4e-15 85.9 89 52.8
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 3.2e-14 83.6 45 88.9
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 6.8e-09 65.9 39 76.9
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 8.9e-09 65.5 39 84.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-06 58.5 45 62.2
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 5.4e-06 56.2 32 81.2


User provided reference genes

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