Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-65 252.3 131 100.0
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 1.8e-53 212.6 131 87.0
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 3.3e-39 165.2 163 56.4
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 7.3e-39 164.1 153 58.2
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 9.6e-39 163.7 82 96.3
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.1e-38 162.5 163 55.8
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.8e-38 162.2 165 55.8
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 8.1e-38 160.6 129 66.7
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 3.4e-36 155.2 151 57.0
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 7.6e-36 154.1 164 53.7
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.2e-34 148.3 151 57.0
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.2e-34 148.3 166 53.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-34 147.9 162 55.6
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 5.4e-34 147.9 162 55.6
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.5e-33 145.2 151 56.3
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 3.5e-33 145.2 152 55.3
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.5e-33 145.2 149 55.7
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 8.7e-32 140.6 172 51.2
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.9e-31 139.4 170 50.0
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 4.3e-31 138.3 170 50.0
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 4.3e-31 138.3 165 52.1
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 9.6e-31 137.1 170 48.2
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 9.6e-31 137.1 164 51.2
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 9.6e-31 137.1 159 49.1
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.6e-30 136.3 159 50.3
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.1e-30 136.0 170 47.6
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 4.8e-30 134.8 170 47.6
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.8e-29 132.9 170 47.1
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.5e-28 129.8 159 49.7
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 2.0e-28 129.4 82 78.0
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 2.6e-28 129.0 159 45.9
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.9e-24 115.2 127 43.3
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 7.4e-23 110.9 159 44.7
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 7.4e-23 110.9 156 41.7
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 3.7e-22 108.6 156 41.7
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 8.1e-22 107.5 154 41.6
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 8.1e-22 107.5 154 39.6
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 2.4e-21 105.9 155 40.6
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 9.0e-21 104.0 154 40.9
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 9.0e-21 104.0 154 40.9
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 9.0e-21 104.0 154 40.3
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.2e-20 103.6 155 38.7
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.5e-20 103.2 155 39.4
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.5e-20 103.2 150 40.7
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.0e-20 102.8 154 40.9
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 2.0e-20 102.8 149 41.6
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.6e-20 102.4 155 40.0
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 4.5e-20 101.7 150 44.0
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 4.5e-20 101.7 155 39.4
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.5e-20 101.7 154 38.3
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 4.5e-20 101.7 155 38.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 5.8e-20 101.3 154 40.3
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 5.8e-20 101.3 154 40.3
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 5.8e-20 101.3 154 39.0
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.0e-19 100.5 155 39.4
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.7e-19 99.8 144 40.3
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-19 99.4 147 39.5
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 2.9e-19 99.0 155 38.7
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 2.9e-19 99.0 152 37.5
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.8e-19 98.6 158 39.9
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 3.8e-19 98.6 154 39.0
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 6.5e-19 97.8 154 39.6
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 6.5e-19 97.8 155 37.4
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 6.5e-19 97.8 155 36.8
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 8.4e-19 97.4 152 39.5
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 8.4e-19 97.4 155 38.1
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 8.4e-19 97.4 155 38.1
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.1e-18 97.1 155 38.1
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.1e-18 97.1 151 39.7
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.1e-18 97.1 158 36.7
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.4e-18 96.7 155 37.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.9e-18 96.3 155 36.8
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.9e-18 96.3 155 38.1
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.9e-18 96.3 154 37.7
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.9e-18 96.3 153 37.3
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 2.5e-18 95.9 154 38.3
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.2e-18 95.1 155 38.7
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 5.5e-18 94.7 151 38.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 5.5e-18 94.7 160 35.6
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 5.5e-18 94.7 153 39.2
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 5.5e-18 94.7 155 37.4
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 7.1e-18 94.4 155 39.4
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 7.1e-18 94.4 156 37.8
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 7.1e-18 94.4 155 37.4
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.3e-18 94.0 154 36.4
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.3e-18 94.0 154 36.4
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.3e-18 94.0 154 36.4
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 1.2e-17 93.6 154 36.4
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-17 93.6 154 36.4
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.2e-17 93.6 156 37.8
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.6e-17 93.2 155 35.5
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.1e-17 92.8 147 37.4
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.1e-17 92.8 141 39.7
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 2.7e-17 92.4 155 37.4
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 2.7e-17 92.4 159 35.8
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 6.0e-17 91.3 160 35.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 7.9e-17 90.9 158 37.3
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 1.0e-16 90.5 155 37.4
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 2.3e-16 89.4 155 36.8
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.3e-16 89.4 160 36.2
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 2.3e-16 89.4 158 36.7
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 3.0e-16 89.0 148 35.1
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 3.9e-16 88.6 176 39.8
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 3.9e-16 88.6 155 34.2
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 5.1e-16 88.2 151 38.4
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 6.7e-16 87.8 155 39.4
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 6.7e-16 87.8 154 35.1
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 8.7e-16 87.4 174 32.8
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 8.7e-16 87.4 174 32.8
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-15 87.0 75 65.3
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 1.5e-15 86.7 76 64.5
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.9e-15 86.3 75 64.0
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.9e-15 86.3 75 64.0
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.9e-15 86.3 75 64.0
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.9e-15 86.3 157 33.1
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 2.5e-15 85.9 74 64.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 2.5e-15 85.9 153 35.3
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.5e-15 85.9 150 34.0
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 5.7e-15 84.7 150 35.3
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 5.7e-15 84.7 160 36.2
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 9.6e-15 84.0 156 35.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 8.2e-14 80.9 155 31.6
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.4e-13 80.1 158 35.4
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 4.1e-13 78.6 156 35.9
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 1.2e-12 77.0 82 47.6
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 3.4e-12 75.5 78 56.4
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 3.4e-12 75.5 78 56.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.3e-11 73.6 150 32.7
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 1.7e-11 73.2 101 46.5
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 2.2e-11 72.8 70 58.6
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 8.4e-11 70.9 79 48.1
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 8.4e-11 70.9 155 29.7
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.4e-10 70.1 94 40.4
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.3e-10 67.4 160 30.0
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.1e-08 61.6 133 30.8


User provided reference genes

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