Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 3.7e-111 404.8 195 100.0
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 6.5e-108 394.0 205 94.1
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.4e-105 386.3 212 91.0
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 7.9e-98 360.5 206 87.9
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 4.5e-93 344.7 236 76.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 9.7e-88 327.0 203 80.3
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.2e-87 325.9 203 80.3
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.2e-87 325.9 203 80.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 5.3e-86 321.2 204 79.4
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.9e-83 312.8 203 77.8
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.4e-78 296.6 197 76.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 3.1e-78 295.4 205 72.7
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 2.3e-76 289.3 204 72.1
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 6.5e-76 287.7 204 73.0
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 1.5e-75 286.6 204 71.1
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 2.8e-71 272.3 204 63.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 2.3e-68 262.7 170 77.1
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-59 233.8 192 56.2
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.5e-59 233.4 192 55.2
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.5e-59 233.4 197 57.4
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.9e-59 233.0 197 55.8
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 3.3e-59 232.3 197 54.8
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 5.6e-59 231.5 192 56.2
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 5.6e-59 231.5 192 57.8
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.2e-58 230.3 192 57.8
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-58 229.9 192 55.2
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 2.1e-58 229.6 192 55.2
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.1e-58 229.6 201 56.2
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 1.4e-57 226.9 126 89.7
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 4.0e-57 225.3 201 55.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 6.8e-57 224.6 198 56.1
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 8.9e-57 224.2 192 54.7
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 8.9e-57 224.2 193 56.0
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 8.9e-57 224.2 201 52.2
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 4.4e-56 221.9 192 54.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 7.5e-56 221.1 202 52.5
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 9.8e-56 220.7 201 51.7
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.7e-55 219.9 211 52.1
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.9e-55 219.2 211 52.1
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 2.9e-55 219.2 186 53.2
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.7e-55 218.8 192 54.7
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 4.9e-55 218.4 211 51.7
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 8.3e-55 217.6 201 54.7
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 4.1e-54 215.3 167 59.9
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.2e-53 213.8 235 46.4
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.2e-53 213.8 206 49.0
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.6e-53 213.4 201 51.2
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.7e-53 212.6 200 52.0
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 4.6e-53 211.8 217 47.9
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 4.6e-53 211.8 216 47.7
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 4.6e-53 211.8 205 47.8
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 4.6e-53 211.8 217 50.7
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 4.6e-53 211.8 217 50.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 6.0e-53 211.5 192 51.0
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 6.0e-53 211.5 191 52.9
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.3e-52 210.3 206 50.0
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 3.0e-52 209.1 169 59.2
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 3.9e-52 208.8 200 51.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 3.9e-52 208.8 199 50.8
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 3.9e-52 208.8 199 51.8
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 5.0e-52 208.4 213 47.9
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 8.6e-52 207.6 192 51.6
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 8.6e-52 207.6 215 47.9
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.1e-51 207.2 192 47.9
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.9e-51 206.5 204 50.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 9.5e-51 204.1 232 46.1
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.1e-50 203.0 217 49.3
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 3.6e-50 202.2 221 47.1
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.7e-50 201.8 196 49.5
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.4e-49 200.3 218 48.2
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.8e-49 199.9 175 56.0
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 6.8e-49 198.0 218 46.8
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.5e-48 196.8 167 56.3
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 7.5e-48 194.5 164 57.3
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 9.9e-48 194.1 192 48.4
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 9.9e-48 194.1 192 48.4
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 3.7e-47 192.2 195 47.7
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 4.9e-47 191.8 226 44.7
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 4.9e-47 191.8 226 44.7
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 8.3e-47 191.0 154 59.7
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.2e-46 189.1 191 49.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.1e-46 188.7 192 49.5
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.2e-45 187.2 193 48.7
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.2e-45 187.2 197 47.7
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.6e-45 186.8 180 51.7
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.6e-45 186.8 165 53.3
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.1e-45 186.4 192 47.4
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.7e-45 186.0 203 45.3
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 4.6e-45 185.3 192 47.9
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 7.8e-45 184.5 181 51.4
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-44 183.7 192 46.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 6.6e-44 181.4 192 46.4
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.3e-43 179.1 198 46.0
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 7.3e-43 177.9 164 51.8
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 9.5e-43 177.6 195 45.1
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.1e-42 176.4 203 42.9
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 6.2e-42 174.9 197 46.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.2e-41 171.8 193 44.0
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.9e-41 171.0 197 45.7
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.6e-40 169.5 193 43.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 4.4e-40 168.7 193 44.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-39 167.2 215 42.8
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 7.1e-38 161.4 156 50.0
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 9.2e-38 161.0 192 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.6e-37 160.2 192 40.6
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.0e-36 157.5 168 47.6
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.0e-36 157.5 135 57.8
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.1e-35 154.1 203 41.9
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 7.3e-35 151.4 151 48.3
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 7.6e-32 141.4 207 39.1
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.8e-31 139.0 193 43.0
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 4.9e-31 138.7 129 54.3
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 3.2e-30 136.0 205 36.6
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.7e-29 132.9 119 46.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.0e-28 131.0 122 45.1
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.3e-25 118.6 192 39.1
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 9.0e-25 117.9 114 50.0
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.5e-24 117.1 98 55.1
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.0e-24 116.7 129 42.6
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.8e-24 115.2 98 55.1
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.7e-23 113.6 104 52.9
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 2.2e-23 113.2 94 56.4
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.8e-23 112.5 182 36.8
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.1e-22 108.2 130 40.8
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.0e-21 105.1 101 51.5
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 8.7e-20 101.3 99 44.4
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 6.9e-17 91.7 70 64.3
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-16 90.5 98 50.0
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.3e-15 87.4 72 66.7
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.1e-14 84.3 95 36.8
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.4e-14 84.0 63 57.1
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 4.6e-13 79.0 49 79.6
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.6e-13 79.0 68 57.4
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-12 77.8 49 77.6
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-12 77.4 101 46.5
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-12 76.3 81 55.6
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 6.7e-12 75.1 95 38.9
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 5.6e-11 72.0 63 44.4
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 7.4e-11 71.6 93 38.7
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-10 69.3 77 46.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 5.3e-09 65.5 138 29.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.2e-08 64.3 61 41.0
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.2e-07 60.1 66 43.9
C01p24870 Brassica napus HOM05D041306 ORTHO05D005514 1.9e-06 57.0 47 61.7
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 3.2e-06 56.2 47 59.6


User provided reference genes

Program Settings