Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 5.7e-295 1016.9 546 100.0
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 5.7e-295 1016.9 546 100.0
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.1e-293 1012.7 546 99.5
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 6.4e-262 907.1 546 92.3
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 4.1e-261 904.4 546 91.8
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 6.2e-257 890.6 547 89.9
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 9.2e-253 876.7 605 81.0
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-247 859.8 551 83.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.5e-244 848.2 565 83.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 4.8e-233 811.2 548 82.5
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 3.7e-225 785.0 548 79.6
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.7e-225 785.0 544 81.1
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.2e-222 775.8 548 79.2
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.0e-211 740.3 579 73.7
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.4e-176 623.6 544 68.4
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.4e-176 623.6 556 66.9
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 4.3e-165 585.5 547 65.3
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.1e-160 570.9 553 61.8
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.5e-157 559.7 549 61.9
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 3.2e-144 516.2 583 54.7
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 6.8e-139 498.4 570 50.5
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 4.4e-138 495.7 572 53.1
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 5.8e-138 495.4 576 50.3
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 3.2e-136 489.6 570 50.5
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 7.1e-136 488.4 577 51.1
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-135 487.6 467 58.5
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.6e-135 487.3 550 53.3
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 6.0e-135 485.3 477 59.3
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.7e-134 483.8 609 46.8
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.1e-133 481.1 466 57.7
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.1e-133 481.1 466 57.7
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 7.3e-133 478.4 466 60.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 6.9e-131 471.9 516 51.6
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 9.0e-131 471.5 582 52.6
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.2e-130 471.1 577 49.7
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 2.0e-130 470.3 466 60.7
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 2.6e-130 469.9 603 48.9
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.7e-129 467.2 571 53.1
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.9e-129 466.5 387 69.5
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 4.9e-129 465.7 593 47.7
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 4.9e-129 465.7 418 61.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 6.4e-129 465.3 580 51.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 6.4e-129 465.3 567 51.9
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 8.4e-129 464.9 566 53.2
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.1e-128 464.5 585 51.8
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.9e-128 463.8 564 52.8
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.0e-126 458.0 573 48.7
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 3.0e-126 456.4 565 52.6
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 8.7e-126 454.9 564 53.2
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.9e-125 453.8 631 47.5
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.3e-125 453.0 679 46.7
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.6e-125 452.2 596 47.7
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 7.3e-125 451.8 567 52.6
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 6.2e-124 448.7 611 48.9
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 2.4e-123 446.8 557 52.1
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.3e-121 441.0 503 51.9
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.3e-121 441.0 543 47.0
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.7e-121 440.7 578 51.0
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.4e-120 437.6 595 48.6
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 7.1e-120 435.3 540 51.9
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 3.5e-119 433.0 602 44.9
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 6.7e-118 428.7 351 65.0
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 6.7e-118 428.7 302 67.2
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 1.1e-117 427.9 394 61.2
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.9e-117 427.2 616 47.9
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 1.6e-116 424.1 642 45.8
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.6e-116 424.1 667 43.6
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 2.8e-116 423.3 302 67.2
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 8.1e-116 421.8 616 47.2
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 2.4e-115 420.2 347 62.2
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 4.0e-115 419.5 400 58.2
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.3e-115 419.1 630 46.2
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 6.9e-115 418.7 301 65.1
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 6.9e-115 418.7 533 51.0
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 1.5e-114 417.5 303 65.7
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.6e-114 416.8 598 44.5
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 2.6e-114 416.8 401 61.3
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 7.6e-114 415.2 561 48.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.7e-113 414.1 632 44.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.2e-113 413.7 304 65.8
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.4e-112 411.0 303 65.3
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.9e-112 410.6 551 46.6
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 2.4e-112 410.2 624 45.7
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 2.3e-110 403.7 391 54.5
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 3.0e-110 403.3 545 47.5
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.3e-109 399.4 303 64.4
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 7.4e-109 398.7 482 49.6
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 2.8e-108 396.7 580 48.1
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.8e-107 394.0 354 57.1
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.2e-106 391.3 556 45.7
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 4.5e-106 389.4 653 44.0
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 4.5e-106 389.4 364 54.4
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 7.6e-106 388.7 302 61.3
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 2.9e-105 386.7 558 47.3
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.0e-102 378.3 272 65.1
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.6e-100 370.9 390 55.6
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.1e-99 368.2 396 48.2
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.8e-99 367.5 618 41.7
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 7.6e-98 362.1 302 60.6
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.2e-96 356.3 305 58.4
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 5.5e-96 355.9 439 57.4
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.9e-89 333.6 302 54.0
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.5e-85 321.2 567 37.7
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 9.7e-85 318.5 301 52.5
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 8.5e-81 305.4 496 42.5
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.1e-80 305.1 298 53.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.0e-78 298.5 669 34.1
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.3e-78 297.4 631 35.8
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 3.1e-75 287.0 325 45.2
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.0e-74 284.3 298 52.0
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.2e-72 276.9 533 39.0
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 5.3e-67 259.6 325 43.4
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 8.8e-62 242.3 322 38.2
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.1e-59 235.3 562 34.2
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.4e-53 213.4 244 53.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.7e-53 213.0 275 53.5
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 6.3e-52 209.5 438 33.6
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.0e-49 202.2 264 43.2
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 3.0e-46 190.7 123 74.8
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.3e-36 158.7 378 28.6
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 7.0e-35 152.9 281 36.7
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 3.5e-26 124.0 93 64.5
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.6e-23 115.2 64 84.4
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 3.1e-22 110.9 69 72.5
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 8.9e-22 109.4 184 36.4
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.8e-15 87.8 62 62.9
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 8.1e-15 86.3 108 45.4
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.4e-14 84.7 108 44.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.4e-11 74.7 38 86.8
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 6.6e-09 66.6 45 68.9
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 5.6e-08 63.5 51 47.1
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.2e-07 60.1 53 52.8


User provided reference genes

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