Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 0.0e+00 1099.0 573 100.0
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 0.0e+00 1099.0 573 100.0
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 0.0e+00 1099.0 573 100.0
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 0.0e+00 1079.7 573 98.3
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 0.0e+00 1077.0 573 98.1
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 7.1e-296 1020.0 583 90.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 2.9e-289 998.0 574 88.5
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 2.1e-276 955.3 576 85.6
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 4.2e-272 941.0 591 84.1
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.5e-265 917.1 606 80.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.2e-264 914.8 576 83.2
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 4.2e-264 914.4 576 84.4
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.7e-252 875.9 575 81.4
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.2e-237 826.6 580 77.2
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 8.8e-222 773.9 571 71.3
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 2.6e-221 772.3 555 71.4
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.3e-220 770.0 556 71.8
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.2e-220 769.2 555 71.2
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.1e-219 766.9 573 70.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 4.1e-219 765.0 571 70.1
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.0e-217 760.4 573 70.3
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 5.0e-217 758.1 557 71.1
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 1.1e-216 756.9 567 69.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.5e-216 756.5 554 72.2
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.9e-216 756.1 554 72.7
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.5e-216 755.7 554 72.9
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.3e-216 755.4 571 68.8
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 7.3e-216 754.2 565 69.6
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 7.3e-216 754.2 554 72.4
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.2e-215 753.4 556 71.8
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.6e-215 753.1 560 70.2
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.8e-215 752.3 567 69.1
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 8.0e-215 750.7 553 71.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 8.0e-215 750.7 570 70.5
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.0e-214 750.4 574 69.2
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.4e-214 750.0 578 69.6
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.8e-214 749.6 574 68.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.8e-214 749.6 563 71.4
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.8e-214 749.6 585 68.9
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 4.0e-214 748.4 567 69.1
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 6.8e-214 747.7 566 70.3
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.0e-213 746.1 558 70.3
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 2.0e-213 746.1 567 68.3
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 2.6e-213 745.7 577 69.3
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.6e-213 745.7 566 69.3
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 5.7e-213 744.6 576 69.6
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 7.5e-213 744.2 552 70.3
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 9.8e-213 743.8 585 68.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.3e-212 743.4 567 70.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.9e-212 742.3 558 71.0
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.9e-212 742.3 551 69.7
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 6.4e-212 741.1 585 68.5
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 6.4e-212 741.1 558 70.6
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 8.3e-212 740.7 553 70.0
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.1e-211 740.3 579 69.3
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 9.2e-211 737.3 569 69.6
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.3e-209 732.6 573 69.3
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.5e-208 729.2 566 68.6
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 3.3e-208 728.8 558 67.9
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 7.3e-208 727.6 563 67.3
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.2e-207 724.5 559 66.9
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.2e-207 724.5 559 67.1
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 6.2e-207 724.5 569 68.7
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.8e-206 723.0 558 67.0
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 4.0e-206 721.8 559 67.8
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.2e-206 721.5 559 66.7
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.8e-206 721.1 559 66.7
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 6.8e-206 721.1 568 69.4
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 8.9e-206 720.7 559 67.6
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.4e-203 713.4 570 66.5
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.7e-202 709.1 548 68.2
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-201 706.8 586 63.7
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 1.3e-201 706.8 558 67.2
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.3e-201 706.8 556 67.4
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.0e-201 705.7 535 70.1
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 3.0e-201 705.7 562 65.5
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.5e-200 703.4 573 66.8
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.5e-200 703.4 558 67.0
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.5e-200 702.6 556 67.3
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 9.5e-200 700.7 579 64.9
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.1e-199 699.5 549 66.7
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 8.1e-199 697.6 658 60.5
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 8.9e-198 694.1 560 67.3
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 8.9e-198 694.1 567 66.3
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 7.5e-197 691.0 586 63.3
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 9.9e-197 690.6 545 67.7
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 4.9e-196 688.3 572 65.9
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 5.4e-195 684.9 592 63.3
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.2e-194 683.7 554 65.7
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.0e-193 680.6 539 67.5
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 8.6e-193 677.6 628 58.8
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-192 677.2 526 71.3
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-192 677.2 526 71.3
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-192 677.2 526 71.3
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 9.5e-192 674.1 555 65.2
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 5.8e-189 664.8 566 66.3
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 7.6e-189 664.5 575 63.8
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.2e-188 662.9 552 64.5
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.1e-187 660.6 494 71.3
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.3e-185 652.9 539 65.1
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 9.6e-184 647.5 557 63.4
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 8.1e-183 644.4 536 64.9
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.1e-182 644.0 541 64.1
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.1e-182 644.0 503 67.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.6e-181 639.4 491 67.2
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.9e-179 633.3 732 51.2
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.5e-170 602.4 575 59.3
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 7.9e-170 601.3 560 60.2
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.7e-167 592.4 524 61.6
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 9.3e-163 577.8 493 62.7
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 3.8e-156 555.8 540 58.9
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.0e-153 547.7 419 69.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.9e-139 500.4 381 73.5
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.0e-133 480.3 569 51.7
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 3.3e-128 463.0 604 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.8e-121 440.7 491 54.8
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.0e-118 428.7 262 88.2
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.0e-101 374.0 312 65.1
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 2.9e-100 370.2 262 72.9
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-92 344.4 287 67.6
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.9e-75 287.7 235 63.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 8.9e-73 278.9 364 47.8
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 7.6e-72 275.8 349 50.7
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.3e-68 264.2 190 72.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 5.1e-68 263.1 537 37.2
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 3.3e-67 260.4 163 79.8
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 8.1e-66 255.8 149 84.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 4.9e-63 246.5 167 76.6
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.5e-56 224.9 422 38.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.2e-55 221.1 428 37.1
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.2e-54 217.2 196 62.2
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 9.9e-48 195.7 172 59.9
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-46 192.2 134 72.4
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 4.3e-43 180.3 140 65.0
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 6.5e-39 166.4 600 30.8
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 9.3e-38 162.5 114 78.1
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 9.3e-38 162.5 176 54.0
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 5.7e-35 153.3 108 71.3
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 2.2e-34 151.4 156 58.3
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 3.1e-33 147.5 151 54.3
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-30 138.3 160 53.8
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-27 128.6 114 62.3
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 3.4e-24 117.5 68 83.8
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 9.4e-22 109.4 75 73.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.4e-20 105.5 57 86.0
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-18 98.2 98 53.1
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 7.0e-17 93.2 182 37.4
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.0e-15 89.4 66 71.2
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.2e-15 88.2 69 66.7
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 2.9e-15 87.8 87 50.6
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.2e-14 84.3 69 56.5
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 7.4e-11 73.2 83 41.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.7e-10 72.0 45 82.2
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-09 68.6 73 54.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 2.6e-08 64.7 49 69.4
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.9e-06 58.5 51 49.0
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.5e-06 57.0 64 54.7
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 7.2e-06 56.6 51 47.1


User provided reference genes

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