Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 5.9e-236 820.5 410 100.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.6e-228 795.8 410 97.1
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.6e-228 795.8 410 97.1
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 2.5e-226 788.5 410 95.9
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.4e-224 782.7 410 95.1
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.0e-224 781.2 410 95.1
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 5.2e-224 780.8 410 94.9
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-223 779.6 410 94.9
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 2.8e-222 775.0 410 94.4
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.4e-221 771.9 410 93.7
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-220 767.7 414 93.2
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.3e-219 766.1 410 93.4
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.6e-217 759.2 410 92.9
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.0e-216 756.5 410 91.5
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.2e-212 743.0 406 91.4
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.4e-208 729.6 395 92.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 6.4e-206 720.7 410 87.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 5.4e-205 717.6 410 87.3
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 6.6e-203 710.7 414 86.7
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.3e-202 708.4 410 87.3
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.8e-201 705.3 408 87.3
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 3.6e-201 704.9 411 86.1
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.6e-201 704.9 410 87.1
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.6e-201 704.9 410 86.1
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 4.7e-201 704.5 414 85.7
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.1e-200 703.4 410 86.1
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.8e-200 702.6 411 85.2
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 4.0e-200 701.4 417 84.9
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 6.8e-200 700.7 411 85.9
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 6.8e-200 700.7 411 85.9
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.2e-199 699.9 410 86.6
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 4.4e-199 698.0 412 85.4
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.7e-198 694.9 412 85.2
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.1e-197 693.3 412 84.5
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.9e-197 692.6 410 85.9
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.9e-197 692.6 411 85.2
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.2e-197 691.8 411 84.9
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.2e-197 691.8 411 85.2
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 7.0e-197 690.6 412 84.7
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 7.0e-197 690.6 411 85.9
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 9.2e-197 690.3 418 84.4
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.2e-196 689.9 413 85.0
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 2.1e-196 689.1 407 84.8
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 2.7e-196 688.7 410 84.9
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 3.5e-196 688.3 410 83.9
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 6.0e-196 687.6 412 84.5
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 6.0e-196 687.6 410 84.6
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 6.0e-196 687.6 412 84.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 7.8e-196 687.2 410 84.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 7.8e-196 687.2 414 84.5
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 7.8e-196 687.2 412 85.0
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 7.8e-196 687.2 411 84.7
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 7.8e-196 687.2 411 84.7
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.3e-195 686.4 427 82.0
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.7e-195 686.0 412 84.7
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.7e-195 686.0 411 85.4
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 2.3e-195 685.6 411 84.4
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 8.6e-195 683.7 413 84.7
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 8.6e-195 683.7 410 84.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.9e-194 682.6 411 84.2
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 3.3e-194 681.8 410 83.4
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.3e-194 681.8 413 84.0
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 4.3e-194 681.4 410 82.9
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 5.6e-194 681.0 422 81.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 7.3e-194 680.6 412 82.5
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.6e-193 679.5 422 83.2
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 2.8e-193 678.7 412 83.3
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.8e-193 678.7 409 82.9
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 83.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 4.7e-193 677.9 374 89.8
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 8.1e-193 677.2 409 82.6
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-192 676.8 409 82.6
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-192 676.8 409 82.6
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 4.0e-192 674.9 409 82.9
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 5.2e-192 674.5 412 83.7
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 8.9e-192 673.7 410 82.4
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.5e-191 672.9 412 82.3
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 3.4e-191 671.8 410 82.2
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 3.4e-191 671.8 410 82.0
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 4.4e-191 671.4 414 81.6
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.8e-191 671.0 414 82.4
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.8e-191 671.0 412 83.0
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.9e-191 670.2 409 82.9
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.7e-190 669.5 410 83.2
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 2.2e-190 669.1 410 82.7
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 2.2e-190 669.1 416 81.7
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 3.7e-190 668.3 412 83.0
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.7e-190 668.3 387 86.8
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 1.1e-189 666.8 421 81.9
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.9e-189 666.0 412 82.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.9e-189 666.0 412 82.3
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.9e-189 666.0 412 82.0
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 2.4e-189 665.6 404 82.2
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.1e-188 662.5 410 80.2
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 2.1e-188 662.5 431 79.4
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 7.8e-188 660.6 423 80.1
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.3e-187 659.8 416 81.0
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.7e-187 659.4 382 85.3
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.6e-187 657.5 414 81.9
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.1e-186 656.8 410 80.5
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 1.1e-186 656.8 376 85.9
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.5e-186 656.4 413 79.4
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.9e-186 656.0 411 80.5
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 2.5e-186 655.6 378 86.2
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.3e-186 655.2 412 79.4
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 9.5e-186 653.7 411 81.3
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.6e-185 652.9 333 95.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 3.0e-179 632.1 377 83.6
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.3e-178 628.2 353 85.0
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 2.8e-177 625.5 410 80.2
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.2e-177 624.4 365 81.6
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 8.4e-174 614.0 365 81.1
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 4.2e-173 611.7 359 80.5
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.7e-171 606.3 414 75.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 6.2e-161 571.2 340 84.1
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.3e-158 563.5 407 72.5
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 4.0e-152 542.0 339 83.8
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 6.9e-152 541.2 326 85.0
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 5.0e-150 535.0 357 72.3
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 8.7e-147 524.2 376 67.0
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.5e-146 522.7 406 70.7
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 8.2e-145 517.7 325 81.2
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 5.0e-142 508.4 285 86.3
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 7.2e-141 504.6 349 69.1
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.1e-140 501.5 318 82.1
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.5e-135 486.9 396 64.1
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.3e-134 483.8 300 82.0
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.1e-130 470.7 379 61.2
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 3.3e-130 469.2 293 81.9
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.2e-125 452.6 248 88.3
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.8e-118 429.1 285 76.8
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.5e-114 417.2 285 74.7
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 3.1e-104 382.9 238 76.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 6.3e-97 358.6 324 62.3
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 3.6e-68 263.1 132 97.7
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 4.7e-68 262.7 132 97.0
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 2.4e-56 223.8 383 37.9
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.4e-51 207.2 104 100.0
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.5e-50 204.5 103 100.0
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.5e-50 204.5 103 100.0
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.8e-49 199.9 118 79.7
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 8.4e-49 198.7 118 78.8
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 5.6e-45 186.0 94 98.9
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.1e-37 161.8 101 79.2
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-35 154.5 105 81.9
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.9e-32 144.4 94 75.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.2e-26 125.2 125 56.8
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 7.7e-26 122.5 100 68.0
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.6e-23 113.6 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-22 111.7 59 88.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.7e-20 104.8 81 67.9
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 8.2e-20 102.4 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.3e-19 99.8 59 83.1
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 7.7e-18 95.9 62 74.2
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 6.1e-07 59.7 84 51.2
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.0e-06 57.0 53 58.5


User provided reference genes

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