Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39587 Brassica carinata HOM05D000706 ORTHO05D001633 3.8e-308 1060.8 593 100.0
C08p26390 Brassica napus HOM05D000706 ORTHO05D001633 9.0e-278 959.9 540 99.8
BolC8t50257H Brassica oleracea HOM05D000706 ORTHO05D001633 2.5e-272 941.8 540 98.3
BraA09t39878Z Brassica rapa HOM05D000706 ORTHO05D001633 7.2e-267 923.7 541 96.9
A09p44170 Brassica napus HOM05D000706 ORTHO05D001633 2.7e-266 921.8 541 96.7
BcaB01g00548 Brassica carinata HOM05D000706 ORTHO05D001633 1.2e-240 836.6 541 88.7
Sp5g11090 Schrenkiella parvula HOM05D000706 ORTHO05D001633 2.3e-220 769.2 541 84.8
AL5G31540 Arabidopsis lyrata HOM05D000706 ORTHO05D001633 5.9e-213 744.6 549 82.5
AT3G51120 Arabidopsis thaliana HOM05D000706 ORTHO05D001633 5.0e-212 741.5 549 76.9
Thhalv10010070m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 9.8e-208 727.2 569 75.4
BcaC06g33055 Brassica carinata HOM05D000706 ORTHO05D001633 3.9e-196 688.7 548 73.5
A03p48130 Brassica napus HOM05D000706 ORTHO05D001633 1.9e-195 686.4 555 76.8
BraA03t13920Z Brassica rapa HOM05D000706 ORTHO05D001633 2.1e-194 682.9 555 76.6
C07p46170 Brassica napus HOM05D000706 ORTHO05D001633 8.9e-193 677.6 548 73.4
BolC7t45133H Brassica oleracea HOM05D000706 ORTHO05D001633 8.9e-193 677.6 548 73.4
CARHR160720 Cardamine hirsuta HOM05D000706 ORTHO05D001633 9.9e-192 674.1 552 70.7
BolC1t02857H Brassica oleracea HOM05D000706 ORTHO05D001633 4.4e-184 648.7 551 75.3
Aa31LG4G19210 Aethionema arabicum HOM05D000706 ORTHO05D001633 9.9e-176 620.9 567 67.0
Carub.0005s1752 Capsella rubella HOM05D000706 ORTHO05D001633 1.6e-173 613.6 517 70.2
BcaC09g50082 Brassica carinata HOM05D000706 ORTHO05D001633 2.5e-171 606.3 539 72.9
THA.LOC104826608 Tarenaya hassleriana HOM05D000706 ORTHO05D001633 1.3e-114 417.9 570 47.7
THA.LOC104819187 Tarenaya hassleriana HOM05D000706 ORTHO05D001633 2.8e-109 400.2 564 51.1
Duzib187G0171 Durio zibethinus HOM05D000706 ORTHO05D001633 3.9e-31 140.6 663 29.7
Thecc.01G023200 Theobroma cacao HOM05D000706 ORTHO05D001633 8.2e-29 132.9 670 28.7
Dinv33601 Davidia involucrata HOM05D000706 ORTHO05D001633 1.1e-28 132.5 469 30.7
Gohir.A02G169000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 5.3e-28 130.2 688 30.8
Gorai.003G011400 Gossypium raimondii HOM05D000706 ORTHO05D001633 3.4e-27 127.5 687 30.9
Gohir.D03G011000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 5.9e-27 126.7 503 35.2
Duzib147G0672 Durio zibethinus HOM05D000706 ORTHO05D001633 4.2e-25 120.6 455 31.0
QL06p033989 Quercus lobata HOM05D000706 ORTHO05D001633 5.5e-25 120.2 448 31.7
Atru.chr3.765 Acer truncatum HOM05D000706 ORTHO05D001633 7.2e-25 119.8 471 29.7
Haze_03809 Corylus avellana HOM05D000706 ORTHO05D001633 1.2e-24 119.0 663 26.8
Gohir.D11G185700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 2.7e-24 117.9 716 30.9
TWI73G0969 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 7.9e-24 116.3 501 28.3
Gohir.A10G097500 Gossypium hirsutum HOM05D000706 ORTHO05D001633 8.8e-23 112.8 660 28.0
Gohir.A11G177900 Gossypium hirsutum HOM05D000706 ORTHO05D001633 8.8e-23 112.8 718 31.2
Gorai.007G197200 Gossypium raimondii HOM05D000706 ORTHO05D001633 3.3e-22 110.9 716 30.6
Cfa006940 Carpinus fangiana HOM05D000706 ORTHO05D001633 5.7e-22 110.2 681 26.6
Gorai.007G049500 Gossypium raimondii HOM05D000706 ORTHO05D001633 1.7e-21 108.6 456 29.2
Cpa.g.sc6.213 Carica papaya HOM05D000706 ORTHO05D001633 8.2e-21 106.3 386 28.0
COL.COLO4_21963 Corchorus olitorius HOM05D000706 ORTHO05D001633 7.0e-20 103.2 499 29.3
Gohir.D11G046150 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.0e-18 99.4 453 28.7
Potri.007G016000 Populus trichocarpa HOM05D000706 ORTHO05D001633 1.5e-17 95.5 432 29.4
Sabra07G0013200 Salix brachista HOM05D000706 ORTHO05D001633 1.9e-17 95.1 726 23.8
Duzib264G0704 Durio zibethinus HOM05D000706 ORTHO05D001633 2.5e-17 94.7 540 27.0
Eucgr.J02395 Eucalyptus grandis HOM05D000706 ORTHO05D001633 2.5e-17 94.7 648 24.2
Prupe.7G165000 Prunus persica HOM05D000706 ORTHO05D001633 2.5e-17 94.7 438 28.1
Dinv40057 Davidia involucrata HOM05D000706 ORTHO05D001633 3.2e-17 94.4 356 28.4
Gorai.011G099700 Gossypium raimondii HOM05D000706 ORTHO05D001633 3.6e-16 90.9 421 30.2
Gohir.D10G090700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.0e-15 89.4 421 30.2
CiPaw.08G135500 Carya illinoinensis HOM05D000706 ORTHO05D001633 1.8e-15 88.6 689 25.0
Ciclev10024691m.g Citrus clementina HOM05D000706 ORTHO05D001633 2.3e-15 88.2 310 33.5
Cc07_g10400 Coffea canephora HOM05D000706 ORTHO05D001633 3.9e-15 87.4 339 27.4
Glyma.01G168900 Glycine max HOM05D000706 ORTHO05D001633 6.7e-15 86.7 292 29.5
Glyma.11G074600 Glycine max HOM05D000706 ORTHO05D001633 6.7e-15 86.7 292 29.1
CiPaw.08G135700 Carya illinoinensis HOM05D000706 ORTHO05D001633 2.6e-14 84.7 669 25.3
Gohir.A11G042650 Gossypium hirsutum HOM05D000706 ORTHO05D001633 4.4e-14 84.0 283 32.9
Phvul.002G111600 Phaseolus vulgaris HOM05D000706 ORTHO05D001633 4.4e-14 84.0 292 29.1
TWI53G1717 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 5.7e-14 83.6 429 27.5
CANSAT01G1453 Cannabis sativa HOM05D000706 ORTHO05D001633 7.4e-14 83.2 694 26.1
Hma1.2p1_0266F.1_g106930 Hydrangea macrophylla HOM05D000706 ORTHO05D001633 1.7e-13 82.0 587 25.9
Potri.005G117300 Populus trichocarpa HOM05D000706 ORTHO05D001633 2.8e-13 81.3 426 27.2
VMungo1215G2634 Vigna mungo HOM05D000706 ORTHO05D001633 2.8e-13 81.3 292 28.8
CAN.G358.3 Capsicum annuum HOM05D000706 ORTHO05D001633 3.7e-13 80.9 668 24.4
Manes.02G101200 Manihot esculenta HOM05D000706 ORTHO05D001633 8.2e-13 79.7 427 26.9
TPR.G2360 Trifolium pratense HOM05D000706 ORTHO05D001633 1.1e-12 79.3 314 28.0
GSVIVG01018827001 Vitis vinifera HOM05D000706 ORTHO05D001633 1.8e-12 78.6 319 28.2
THA.LOC104807483 Tarenaya hassleriana HOM05D000706 ORTHO05D001633 4.1e-12 77.4 366 28.7
Nitab4.5_0000753g0060 Nicotiana tabacum HOM05D000706 ORTHO05D001633 4.5e-11 73.9 313 28.4
Ca_24897_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 5.9e-11 73.6 299 29.4
Sabra05G0096300 Salix brachista HOM05D000706 ORTHO05D001633 7.7e-11 73.2 753 23.0
Nitab4.5_0010830g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.0e-10 72.8 320 28.8
SalBow8G2798 Salvia bowleyana HOM05D000706 ORTHO05D001633 1.3e-10 72.4 351 26.2
Carub.0003s3222 Capsella rubella HOM05D000706 ORTHO05D001633 5.0e-10 70.5 371 26.7
Lj2g0017487 Lotus japonicus HOM05D000706 ORTHO05D001633 6.5e-10 70.1 287 27.5
MD02G1135700 Malus domestica HOM05D000706 ORTHO05D001633 8.5e-10 69.7 668 22.6
BcaB03g16593 Brassica carinata HOM05D000706 ORTHO05D001633 1.5e-09 68.9 327 25.4
BcaC04g22931 Brassica carinata HOM05D000706 ORTHO05D001633 1.5e-09 68.9 359 24.8
Oeu012301.1 Olea europaea HOM05D000706 ORTHO05D001633 1.9e-09 68.6 511 23.3
C09p13780 Brassica napus HOM05D002906 ORTHO05D003211 2.5e-09 68.2 361 24.7
PGSC0003DMG400003622 Solanum tuberosum HOM05D000706 ORTHO05D001633 2.5e-09 68.2 298 28.5
Psat2g155760 Pisum sativum HOM05D000706 ORTHO05D001633 3.2e-09 67.8 289 27.7
Solyc02g084520.3 Solanum lycopersicum HOM05D000706 ORTHO05D001633 3.2e-09 67.8 737 22.7
Aa31LG8G15250 Aethionema arabicum HOM05D000706 ORTHO05D001633 4.2e-09 67.4 326 26.1
BcaB08g34790 Brassica carinata HOM05D000706 ORTHO05D001633 7.2e-09 66.6 356 26.1
Migut.L00038 Erythranthe guttata HOM05D000706 ORTHO05D001633 7.2e-09 66.6 274 26.3
Manes.01G142800 Manihot esculenta HOM05D000706 ORTHO05D001633 7.2e-09 66.6 712 23.6
AT2G18090 Arabidopsis thaliana HOM05D000706 ORTHO05D001633 9.4e-09 66.2 367 24.8
CARHR108570 Cardamine hirsuta HOM05D000706 ORTHO05D001633 1.2e-08 65.9 364 26.6
Thhalv10022555m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 1.2e-08 65.9 343 23.3
AL3G51260 Arabidopsis lyrata HOM05D000706 ORTHO05D001633 1.6e-08 65.5 369 25.2
BolC9t54266H Brassica oleracea HOM05D002906 ORTHO05D003211 2.1e-08 65.1 361 24.1
Lalb_Chr09g0321951 Lupinus albus HOM05D000706 ORTHO05D001633 2.1e-08 65.1 290 27.2
Medtr5g021500 Medicago truncatula HOM05D000706 ORTHO05D001633 2.1e-08 65.1 324 25.3
FAN28G1501 Fragaria x ananassa HOM05D000706 ORTHO05D001633 2.7e-08 64.7 214 31.8
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 3.6e-08 64.3 359 24.5
Sp3g31520 Schrenkiella parvula HOM05D000706 ORTHO05D001633 3.6e-08 64.3 365 24.9
HanXRQChr09g0260881 Helianthus annuus HOM05D000706 ORTHO05D001633 4.7e-08 63.9 55 50.9
unitig_899.g14628 Utricularia gibba HOM05D000706 ORTHO05D001633 6.1e-08 63.5 459 26.4
PGR102G2187 Punica granatum HOM05D000706 ORTHO05D001633 8.0e-08 63.2 331 36.6
FAN23G0695 Fragaria x ananassa HOM05D000706 ORTHO05D001633 1.0e-07 62.8 214 30.8
vmacro22093 Vaccinium macrocarpon HOM05D000706 ORTHO05D001633 1.0e-07 62.8 637 23.4
CSS0050455 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 1.8e-07 62.0 670 23.7
Peaxi162Scf00083g01229 Petunia axillaris HOM05D000706 ORTHO05D001633 2.3e-07 61.6 320 25.0
A09p11710 Brassica napus HOM05D002906 ORTHO05D003211 3.0e-07 61.2 361 24.1
Lsat_1_v5_gn_4_152920 Lactuca sativa HOM05D000706 ORTHO05D001633 3.0e-07 61.2 47 55.3
Sopen02g029200 Solanum pennellii HOM05D000706 ORTHO05D001633 3.0e-07 61.2 736 23.0
Oeu063193.2 Olea europaea HOM05D001544 ORTHO05D002732 4.0e-07 60.8 192 30.7
MSTRG.23284 Avicennia marina HOM05D000706 ORTHO05D001633 1.5e-06 58.9 341 27.3
MD15G1249200 Malus domestica HOM05D000706 ORTHO05D001633 1.5e-06 58.9 461 23.6
ECA232G1998 Erigeron canadensis HOM05D000706 ORTHO05D001633 2.6e-06 58.2 44 54.5
FAN26G0297 Fragaria x ananassa HOM05D000706 ORTHO05D001633 2.6e-06 58.2 214 30.4
Rhsim08G0035300 Rhododendron simsii HOM05D000706 ORTHO05D001633 2.6e-06 58.2 293 35.2
FvH4_1g12170 Fragaria vesca HOM05D000706 ORTHO05D001633 3.4e-06 57.8 571 25.7
RcHm_v2.0_Chr2g0099931 Rosa chinensis HOM05D000706 ORTHO05D001633 3.4e-06 57.8 166 33.7
Hund16475 Selenicereus undatus HOM05D000706 ORTHO05D001633 4.4e-06 57.4 51 52.9
EL10As8g23852 Beta vulgaris HOM05D000706 ORTHO05D001633 5.7e-06 57.0 91 41.8
Hma1.2p1_0743F.1_g211440 Hydrangea macrophylla HOM05D000706 ORTHO05D001633 7.5e-06 56.6 99 40.4
CSS0022868 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 9.7e-06 56.2 400 24.2


User provided reference genes

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