Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.5e-98 362.8 186 100.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.2e-90 336.7 186 94.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.2e-90 336.7 186 94.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-71 273.5 228 69.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-71 273.5 228 69.7
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.0e-70 270.4 228 69.3
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 6.7e-70 267.7 228 69.3
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 8.7e-70 267.3 228 69.3
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 9.7e-69 263.8 228 68.0
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 8.2e-68 260.8 228 68.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 2.4e-67 259.2 228 67.1
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 5.3e-67 258.1 228 67.5
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 6.9e-67 257.7 228 67.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 7.7e-66 254.2 228 66.2
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 7.7e-66 254.2 226 66.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.9e-65 252.3 226 66.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 6.5e-65 251.1 226 65.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.1e-64 250.4 227 65.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-62 243.0 224 66.5
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-62 243.0 224 66.5
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.0e-62 242.3 224 65.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 5.7e-61 238.0 225 65.8
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 5.7e-61 238.0 225 65.8
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.8e-60 235.7 226 65.0
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.0e-57 224.9 227 59.9
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 4.8e-52 208.4 157 73.2
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 7.7e-50 201.1 222 55.9
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.3e-45 185.7 217 55.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.7e-45 184.9 226 54.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.8e-44 181.8 231 53.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.8e-44 181.8 231 53.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.8e-44 181.8 204 55.9
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.8e-43 179.9 192 56.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.4e-43 179.5 220 53.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 3.1e-43 179.1 174 60.9
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 4.1e-43 178.7 168 60.1
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 4.1e-43 178.7 170 60.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.3e-43 178.3 220 53.2
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 7.0e-43 177.9 212 55.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 9.1e-43 177.6 174 60.9
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 9.1e-43 177.6 176 59.7
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 9.1e-43 177.6 171 62.6
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.2e-42 177.2 227 51.5
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-42 177.2 171 62.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-42 176.8 206 54.9
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.6e-42 176.8 209 55.5
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.0e-42 176.4 172 61.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.0e-42 176.4 206 54.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.0e-42 176.4 173 60.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.0e-42 176.4 177 58.2
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 2.6e-42 176.0 189 58.7
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-42 176.0 172 60.5
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.5e-42 175.6 212 53.3
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.5e-42 175.6 227 51.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.5e-42 175.3 170 62.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 4.5e-42 175.3 176 59.1
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 4.5e-42 175.3 200 55.5
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 5.9e-42 174.9 226 52.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 5.9e-42 174.9 179 57.0
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.9e-42 174.9 179 57.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.9e-42 174.9 170 61.2
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 5.9e-42 174.9 170 61.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 5.9e-42 174.9 188 58.0
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 7.7e-42 174.5 170 60.6
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.0e-41 174.1 174 60.3
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.3e-41 173.7 222 53.2
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-41 173.7 171 59.1
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.7e-41 173.3 170 62.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.7e-41 173.3 174 60.3
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.7e-41 173.3 188 53.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.2e-41 172.9 242 50.0
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.9e-41 172.6 191 55.5
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-41 172.6 171 59.6
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-41 172.6 171 59.6
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.9e-41 172.6 171 59.6
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.0e-41 171.8 170 58.8
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 5.0e-41 171.8 174 59.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.0e-41 171.8 170 59.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 6.5e-41 171.4 191 55.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 6.5e-41 171.4 170 60.0
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 6.5e-41 171.4 176 58.0
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.5e-41 171.4 174 57.5
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 6.5e-41 171.4 171 59.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 8.5e-41 171.0 189 55.6
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 8.5e-41 171.0 177 57.1
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 8.5e-41 171.0 225 49.8
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 8.5e-41 171.0 171 60.8
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.1e-40 170.6 172 59.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-40 170.6 164 61.6
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.1e-40 170.6 172 59.3
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.5e-40 170.2 170 58.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.5e-40 170.2 173 57.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.5e-40 170.2 172 58.1
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.9e-40 169.9 190 54.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-40 169.9 173 59.5
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.9e-40 169.9 230 50.0
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.9e-40 169.9 171 58.5
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.9e-40 169.9 171 58.5
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.5e-40 169.5 171 59.1
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.5e-40 169.5 171 58.5
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 3.2e-40 169.1 211 53.6
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 3.2e-40 169.1 171 59.6
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.2e-40 169.1 189 55.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-40 169.1 170 59.4
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 5.5e-40 168.3 189 55.6
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.2e-40 167.9 170 60.0
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 7.2e-40 167.9 189 55.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.4e-40 167.5 173 56.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 9.4e-40 167.5 192 54.2
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-39 167.2 169 60.4
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.6e-39 166.8 227 49.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.7e-39 166.0 160 60.6
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.7e-39 166.0 170 59.4
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.6e-39 165.6 168 59.5
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.4e-38 163.7 171 57.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.3e-38 162.9 170 58.8
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.0e-38 162.5 171 57.3
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.2e-38 161.8 169 57.4
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 6.7e-38 161.4 188 53.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 6.7e-38 161.4 184 55.4
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 8.8e-38 161.0 188 54.3
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 8.8e-38 161.0 189 54.0
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.6e-37 159.5 188 53.2
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.6e-37 159.5 169 57.4
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-37 159.5 176 54.5
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-37 159.5 176 54.5
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.6e-37 159.5 189 50.8
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 5.7e-37 158.3 191 53.4
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 5.7e-37 158.3 169 57.4
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.5e-37 157.9 177 52.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.3e-36 157.1 188 52.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.3e-36 157.1 178 55.1
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.3e-36 157.1 171 55.6
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.7e-36 156.8 184 52.7
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-36 156.4 148 60.8
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.2e-36 156.4 166 57.8
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.2e-36 156.4 162 56.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.2e-36 156.4 193 52.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.8e-36 156.0 178 53.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.8e-36 156.0 193 51.8
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.1e-35 154.1 162 55.6
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.4e-35 153.7 196 51.0
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.4e-35 152.9 169 56.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.1e-35 152.1 224 47.3
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 4.1e-35 152.1 171 54.4
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 5.3e-35 151.8 160 53.8
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 9.1e-35 151.0 176 55.7
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.2e-34 150.6 169 56.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.7e-34 149.4 146 60.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.3e-33 147.1 146 59.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.5e-32 142.9 170 55.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.8e-30 136.7 147 53.7
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.3e-30 136.3 147 55.8
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.0e-30 136.0 190 44.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.0e-29 133.3 131 60.3
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.1e-27 127.5 170 45.9
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 4.1e-27 125.6 129 58.1
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.2e-26 124.0 131 55.7
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.9e-24 116.7 138 52.9
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 6.3e-20 101.7 139 43.9
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.9e-17 92.4 70 65.7
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.1e-16 90.9 146 42.5
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.8e-07 59.7 42 69.0


User provided reference genes

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