Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38178 Brassica carinata HOM05D004509 ORTHO05D023994 1.1e-38 162.9 88 100.0
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 2.0e-32 142.1 77 100.0
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 2.0e-32 142.1 77 100.0
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 2.0e-32 142.1 77 100.0
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 9.9e-32 139.8 77 98.7
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 1.7e-31 139.0 77 98.7
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 2.2e-31 138.7 77 96.1
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 4.9e-31 137.5 77 94.8
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.1e-30 136.3 77 93.5
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 1.4e-30 136.0 77 93.5
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 9.3e-30 133.3 77 90.9
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 1.6e-29 132.5 77 92.2
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 3.0e-28 128.3 78 92.3
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 6.7e-28 127.1 78 91.0
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 8.7e-28 126.7 77 90.9
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 1.1e-27 126.3 77 87.0
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 1.5e-27 125.9 77 90.9
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.8e-25 119.0 77 81.8
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 3.1e-25 118.2 77 80.5
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 1.5e-24 115.9 77 79.2
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 2.0e-24 115.5 77 79.2
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 9.3e-22 106.7 78 79.5
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 6.7e-20 100.5 77 68.8
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 7.4e-19 97.1 70 78.6
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 7.4e-19 97.1 70 78.6
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 7.4e-19 97.1 78 67.9
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 4.8e-18 94.4 78 66.7
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 6.3e-18 94.0 78 66.7
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 8.2e-18 93.6 77 63.6
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 8.2e-18 93.6 78 65.4
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 8.2e-18 93.6 78 65.4
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 1.4e-17 92.8 78 64.1
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.4e-17 92.0 78 64.1
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 2.4e-17 92.0 77 64.9
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 2.4e-17 92.0 80 66.2
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 5.3e-17 90.9 77 64.9
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 6.9e-17 90.5 78 60.3
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.9e-17 90.5 78 60.3
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.9e-17 90.5 78 60.3
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.9e-17 90.5 78 60.3
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.2e-16 89.7 87 60.9
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.5e-16 89.4 77 61.0
QL05p008713 Quercus lobata HOM05D004509 ORTHO05D023994 1.5e-16 89.4 77 63.6
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 2.6e-16 88.6 77 59.7
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 3.4e-16 88.2 78 59.0
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 4.5e-16 87.8 77 62.3
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 7.7e-16 87.0 78 59.0
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 1.0e-15 86.7 77 58.4
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.0e-15 86.7 78 57.7
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 1.3e-15 86.3 77 57.1
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 1.3e-15 86.3 77 57.1
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 1.3e-15 86.3 77 62.3
BcaC04g23152 Brassica carinata HOM05D014297 ORTHO05D023994 2.2e-15 85.5 63 74.6
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 2.2e-15 85.5 77 59.7
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 2.9e-15 85.1 77 58.4
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.9e-15 85.1 77 59.7
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 6.5e-15 84.0 86 55.8
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 6.5e-15 84.0 77 59.7
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 6.5e-15 84.0 77 61.0
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 6.5e-15 84.0 77 59.7
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 8.5e-15 83.6 78 59.0
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 8.5e-15 83.6 77 54.5
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 1.1e-14 83.2 78 62.8
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 1.4e-14 82.8 77 62.3
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 1.4e-14 82.8 78 55.1
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 2.5e-14 82.0 78 55.1
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 3.2e-14 81.6 78 53.8
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 4.2e-14 81.3 86 54.7
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 5.5e-14 80.9 78 55.1
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 5.5e-14 80.9 77 59.7
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 9.4e-14 80.1 77 51.9
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 1.2e-13 79.7 77 51.9
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 1.2e-13 79.7 78 60.3
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 1.2e-13 79.7 78 60.3
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 1.2e-13 79.7 78 60.3
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.6e-13 79.3 86 52.3
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 2.7e-13 78.6 77 58.4
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 3.6e-13 78.2 78 59.0
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 3.6e-13 78.2 78 59.0
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 3.6e-13 78.2 77 54.5
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 3.6e-13 78.2 77 51.9
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 3.6e-13 78.2 86 52.3
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 4.6e-13 77.8 77 54.5
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 6.1e-13 77.4 77 58.4
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 7.9e-13 77.0 78 52.6
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 1.0e-12 76.6 87 51.7
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 1.0e-12 76.6 77 54.5
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 1.4e-12 76.3 78 51.3
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 2.3e-12 75.5 87 50.6
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 3.9e-12 74.7 87 50.6
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 6.7e-12 73.9 78 52.6
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 6.7e-12 73.9 78 59.0
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 8.8e-12 73.6 77 53.2
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 1.1e-11 73.2 77 54.5
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 1.1e-11 73.2 77 53.2
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 1.5e-11 72.8 77 51.9
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 2.0e-11 72.4 78 52.6
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 2.0e-11 72.4 78 47.4
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 2.5e-11 72.0 77 49.4
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 3.3e-11 71.6 78 50.0
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 9.7e-11 70.1 77 50.6
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 9.7e-11 70.1 77 50.6
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 1.3e-10 69.7 77 53.2
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 1.3e-10 69.7 77 55.8
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 2.8e-10 68.6 78 46.2
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 2.8e-10 68.6 77 53.2
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 2.8e-10 68.6 77 53.2
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 3.7e-10 68.2 78 47.4
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 4.8e-10 67.8 70 51.4
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 4.8e-10 67.8 77 49.4
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 8.2e-10 67.0 81 49.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 8.2e-10 67.0 77 51.9
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 1.8e-09 65.9 80 55.0
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 9.1e-09 63.5 77 44.2
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 1.2e-08 63.2 84 40.5
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.5e-08 62.8 77 46.8
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 2.0e-08 62.4 77 42.9
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 7.7e-08 60.5 77 44.2
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 7.7e-08 60.5 77 42.9
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 2.2e-07 58.9 77 44.2
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 5.0e-07 57.8 77 44.2
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 1.9e-06 55.8 77 41.6


User provided reference genes

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