Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-232 807.7 414 100.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 4.0e-232 807.7 414 100.0
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 6.8e-232 807.0 414 99.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-231 805.4 414 99.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 9.8e-231 803.1 414 99.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 6.6e-227 790.4 426 95.8
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.1e-226 789.6 414 96.9
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.5e-226 789.3 414 96.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.3e-226 788.1 426 95.5
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.3e-226 788.1 426 95.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.5e-226 786.6 414 96.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.6e-225 784.6 414 96.6
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-224 783.1 414 96.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.9e-222 775.0 414 94.7
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.4e-216 756.1 414 93.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.2e-212 743.0 414 89.9
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 4.6e-212 741.1 414 90.3
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.0e-212 740.7 416 92.5
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 9.6e-202 706.8 414 86.0
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.4e-200 702.2 414 85.3
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.6e-199 698.7 414 85.5
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.9e-198 695.3 409 85.3
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.4e-197 692.2 414 83.6
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 82.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 6.7e-195 684.1 414 82.9
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-194 682.6 418 86.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.3e-194 681.4 414 81.6
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 83.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 83.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 81.4
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-193 679.9 414 81.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.3e-193 679.9 414 81.6
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.1e-193 679.1 416 82.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 81.2
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 82.4
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 81.9
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 8.1e-193 677.2 410 82.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.4e-192 676.4 414 81.6
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 6.9e-192 674.1 414 81.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 6.9e-192 674.1 414 81.4
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.2e-191 673.3 413 81.6
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.6e-191 672.2 414 80.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 5.8e-191 671.0 411 82.2
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.4e-189 666.4 413 80.4
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 7.1e-189 664.1 413 81.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.2e-188 663.3 414 81.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.6e-188 662.9 414 80.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 3.5e-188 661.8 409 80.0
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 4.6e-188 661.4 414 80.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 80.4
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 7.9e-188 660.6 414 80.9
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.3e-187 659.8 414 79.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 3.0e-187 658.7 414 80.0
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.0e-187 658.7 445 76.0
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.9e-187 658.3 414 79.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.9e-187 658.3 411 80.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.1e-186 656.8 409 81.4
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 79.7
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.9e-186 656.0 411 80.3
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 5.7e-186 654.4 411 80.0
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 9.6e-186 653.7 411 79.6
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.6e-185 652.9 413 79.2
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 4.8e-185 651.4 415 79.5
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 8.2e-185 650.6 413 79.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-184 650.2 414 78.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 9.0e-184 647.1 414 78.3
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 9.0e-184 647.1 413 78.9
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.2e-183 646.7 414 78.7
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 4.5e-183 644.8 414 78.3
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.3e-182 643.3 413 78.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.2e-182 642.5 413 77.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 3.8e-182 641.7 414 78.0
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 5.0e-182 641.3 410 78.0
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 6.5e-182 641.0 413 79.7
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.1e-181 640.2 413 77.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 5.5e-181 637.9 414 77.5
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.2e-180 636.7 414 77.3
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.2e-180 636.7 416 77.6
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 6.7e-179 630.9 420 76.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.1e-178 630.2 420 76.2
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.5e-178 629.0 412 76.9
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 7.4e-178 627.5 415 77.8
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 9.7e-178 627.1 375 84.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.3e-177 626.7 371 84.9
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 3.7e-177 625.2 430 74.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.4e-176 623.2 439 73.1
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 9.0e-176 620.5 410 77.1
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.0e-171 607.1 415 74.0
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.4e-171 606.7 415 74.2
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.8e-169 598.2 413 70.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.4e-168 596.7 414 74.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.6e-167 592.4 305 99.0
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.2e-166 589.3 415 72.0
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 6.1e-164 581.3 410 74.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.9e-164 580.9 406 73.6
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 8.2e-161 570.9 414 71.3
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 8.5e-158 560.8 371 77.1
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.9e-157 559.7 411 71.8
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 4.4e-154 548.5 410 66.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 2.2e-153 546.2 410 66.6
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 9.4e-149 530.8 323 82.0
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 9.4e-149 530.8 485 61.9
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.0e-147 525.4 412 68.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.5e-142 508.1 313 85.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.9e-141 506.5 398 64.8
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.4e-139 500.4 405 59.8
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.5e-138 496.9 412 60.7
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.5e-135 485.3 294 83.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-134 483.0 294 83.0
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 8.6e-134 481.1 296 80.1
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-125 454.1 284 83.8
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.8e-122 441.0 256 85.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-116 422.2 292 79.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.4e-112 410.6 256 78.1
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 7.3e-109 398.3 314 65.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.1e-107 394.4 285 70.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 5.2e-99 365.5 415 48.0
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.8e-90 335.5 238 73.1
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-83 314.7 191 81.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-80 302.4 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.0e-78 296.6 205 74.1
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 4.8e-76 289.3 184 77.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-70 270.8 204 71.1
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.3e-69 266.2 173 75.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 3.9e-62 243.0 399 36.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.7e-61 239.2 199 70.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-58 230.7 126 88.9
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.7e-57 227.6 403 34.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.0e-57 226.1 161 77.6
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.1e-56 224.9 220 54.1
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-55 221.5 139 80.6
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-55 220.3 177 71.8
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 4.6e-55 219.5 321 36.1
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.9e-49 200.3 114 89.5
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-47 193.7 121 77.7
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-41 174.9 102 83.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 3.1e-35 153.7 414 30.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 85.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.6e-31 140.2 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.1e-27 128.6 107 58.9
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-26 124.4 115 60.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.8e-25 120.2 127 61.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.5e-24 118.2 143 53.8
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 6.1e-23 112.8 146 52.7
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-19 100.5 72 77.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.4e-19 99.8 99 57.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.0e-17 93.2 153 38.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-16 90.9 51 84.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.1e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.9e-12 76.6 54 75.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 57 61.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-07 61.6 81 44.4
Cfa025229 Carpinus fangiana HOM05D004528 ORTHO05D005815 5.2e-06 56.6 309 24.3


User provided reference genes

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