Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 3.6e-158 561.6 299 100.0
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 3.6e-158 561.6 299 100.0
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 3.6e-158 561.6 299 100.0
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 5.4e-154 547.7 299 97.0
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 5.4e-154 547.7 299 97.0
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.3e-152 542.3 299 96.0
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 4.3e-143 511.5 310 89.0
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 4.4e-140 501.5 308 89.3
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.7e-139 499.6 309 87.7
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.7e-137 492.3 307 87.3
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 8.6e-136 487.3 301 88.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.6e-134 483.0 307 86.6
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.6e-121 439.9 314 74.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 6.6e-120 434.5 308 74.0
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 3.1e-117 425.6 310 72.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 4.0e-117 425.2 305 74.8
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 5.3e-117 424.9 311 71.1
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.5e-116 423.3 310 70.0
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.4e-116 422.2 309 70.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.4e-116 422.2 309 70.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-115 420.2 309 70.6
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.2e-115 419.5 308 71.1
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.2e-115 419.5 308 71.1
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.4e-115 417.5 308 70.8
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.1e-114 417.2 316 70.6
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.9e-114 416.4 309 71.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.4e-114 416.0 316 69.0
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.4e-114 416.0 305 70.2
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.2e-114 415.6 311 68.5
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.2e-114 415.6 307 70.7
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.2e-114 415.6 312 70.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.2e-114 415.2 311 70.1
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 9.3e-114 414.1 307 71.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 9.3e-114 414.1 311 70.1
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 9.3e-114 414.1 311 70.1
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.2e-113 413.7 316 68.7
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.6e-113 413.3 310 70.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 1.6e-113 413.3 316 70.9
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.5e-113 412.1 309 69.6
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.5e-113 412.1 316 68.0
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 3.5e-113 412.1 316 68.7
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.0e-113 411.4 313 69.6
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 7.9e-113 411.0 311 72.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.3e-112 410.2 308 69.2
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.8e-112 409.8 311 68.8
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 2.3e-112 409.5 307 71.0
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.3e-112 409.5 309 68.6
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.3e-112 409.5 314 68.5
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.3e-112 409.5 313 67.4
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.0e-112 409.1 311 69.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 5.1e-112 408.3 309 68.9
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.5e-111 406.8 308 69.8
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 2.5e-111 406.0 299 69.9
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.5e-111 406.0 298 72.5
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 3.3e-111 405.6 311 67.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.3e-111 405.6 311 67.2
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 4.3e-111 405.2 308 66.6
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 5.6e-111 404.8 309 67.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 5.6e-111 404.8 311 67.2
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 7.4e-111 404.4 310 67.1
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.6e-111 404.1 311 66.9
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 9.6e-111 404.1 314 66.9
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 9.6e-111 404.1 303 71.9
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.3e-110 403.7 315 66.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.8e-110 402.5 320 66.6
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 2.8e-110 402.5 312 68.3
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 2.8e-110 402.5 312 68.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.8e-110 402.5 307 68.7
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.8e-110 402.5 307 68.4
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.8e-110 402.5 307 68.4
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.7e-110 402.1 303 70.0
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.1e-109 400.6 315 66.3
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.4e-109 400.2 305 69.2
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.8e-109 399.8 298 71.8
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.8e-109 399.8 311 66.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 3.1e-109 399.1 315 67.0
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 6.9e-109 397.9 310 68.1
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 6.9e-109 397.9 311 65.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 6.9e-109 397.9 308 67.9
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 9.0e-109 397.5 312 65.7
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.5e-108 396.7 314 67.2
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.6e-108 396.0 299 71.6
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.7e-107 393.3 316 65.5
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.2e-107 392.9 312 65.4
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.8e-107 392.1 311 67.8
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 6.4e-107 391.3 310 67.7
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.4e-106 390.2 345 62.0
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.4e-106 390.2 311 65.3
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.2e-106 389.0 349 60.5
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 9.3e-106 387.5 300 67.7
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.2e-105 387.1 310 64.2
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.5e-105 385.6 300 68.0
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 6.0e-105 384.8 307 67.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.3e-103 378.6 314 67.5
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.1e-101 374.0 247 77.7
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.1e-97 359.8 290 66.2
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.7e-97 359.4 223 81.2
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.3e-95 352.1 276 66.3
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.7e-95 351.7 231 75.8
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 3.7e-94 349.0 342 54.7
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 4.8e-94 348.6 333 58.0
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 3.1e-93 345.9 328 59.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 6.9e-93 344.7 340 55.0
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.5e-92 343.6 202 85.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.7e-92 341.3 242 71.5
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 4.2e-90 335.5 299 57.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.8e-88 327.8 317 54.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-86 323.9 203 78.3
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 4.8e-86 322.0 211 76.8
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 6.9e-85 318.2 309 58.6
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.5e-84 317.0 295 65.1
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-84 317.0 266 61.7
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.4e-84 315.8 220 73.6
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 7.7e-84 314.7 303 56.8
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.0e-83 314.3 299 59.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-81 307.0 303 56.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.8e-78 296.2 219 68.0
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 1.6e-73 280.4 183 75.4
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.0e-64 251.1 204 66.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.2e-59 233.4 232 56.0
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 2.2e-59 233.4 219 62.1
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 6.1e-57 225.3 384 40.6
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 8.0e-57 224.9 189 68.3
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 4.9e-46 189.1 117 83.8
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 8.3e-46 188.3 224 46.4
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.7e-44 183.3 189 53.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.5e-44 182.6 300 42.7
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 5.9e-44 182.2 220 47.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.6e-41 174.1 96 96.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 7.5e-39 165.2 192 47.4
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.6e-36 157.5 95 85.3
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.3e-34 149.4 109 66.1
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.6e-33 147.5 122 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.1e-33 147.1 205 40.5
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 4.4e-31 139.4 126 57.9
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 4.4e-31 139.4 126 57.9
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.3e-30 137.9 93 78.5
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.2e-30 137.1 224 43.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.3e-27 127.9 80 81.2
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.5e-26 124.4 189 39.2
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.6e-23 113.6 230 39.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 3.7e-22 109.8 138 45.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-21 108.2 95 63.2
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.4e-13 80.5 58 69.0
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.2e-12 78.2 63 61.9
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.6e-11 72.4 38 81.6
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.3e-10 68.9 59 52.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.4e-07 60.1 43 60.5
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.4e-07 59.7 38 68.4
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 4.4e-07 59.7 38 65.8
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.3e-06 58.2 38 63.2
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 2.9e-06 57.0 38 63.2
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 4.9e-06 56.2 38 63.2
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 4.9e-06 56.2 38 60.5
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 6.4e-06 55.8 38 60.5
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 6.4e-06 55.8 33 63.6
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 8.4e-06 55.5 59 45.8
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 8.4e-06 55.5 59 45.8
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 8.4e-06 55.5 59 45.8
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.4e-06 55.5 62 54.8


User provided reference genes

Program Settings