Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34218 Brassica carinata HOM05D000104 ORTHO05D004024 4.3e-113 411.4 214 100.0
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 2.7e-67 259.2 245 62.4
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 2.7e-67 259.2 245 62.4
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 8.0e-67 257.7 245 62.0
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 8.0e-67 257.7 245 62.0
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 1.5e-60 236.9 249 59.8
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.9e-60 236.5 246 59.3
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 1.9e-60 236.5 246 59.3
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 1.9e-60 236.5 246 59.3
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 5.5e-60 235.0 249 59.4
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 7.2e-60 234.6 249 58.6
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 9.4e-60 234.2 249 58.2
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 2.1e-59 233.0 246 58.9
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 4.7e-59 231.9 246 58.5
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 6.8e-58 228.0 249 57.8
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 8.8e-58 227.6 249 57.8
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 4.4e-57 225.3 246 56.9
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 4.5e-54 215.3 247 55.5
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.6e-51 206.8 251 53.0
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.2e-48 196.4 248 51.6
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.4e-47 193.0 248 50.8
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.0e-45 185.3 250 48.0
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 5.0e-45 185.3 250 48.0
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.5e-44 183.0 248 49.2
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.6e-44 181.8 250 47.6
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 5.6e-44 181.8 252 47.6
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 3.6e-43 179.1 249 47.8
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 4.7e-43 178.7 252 47.2
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.7e-43 178.7 252 46.8
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.4e-42 177.2 252 46.0
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 1.8e-42 176.8 258 46.5
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 1.8e-42 176.8 251 47.4
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 2.3e-42 176.4 258 46.5
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.9e-42 174.5 252 45.6
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 2.6e-41 172.9 251 45.8
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 2.6e-41 172.9 259 45.2
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 3.4e-41 172.6 256 46.5
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 5.7e-41 171.8 254 46.1
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 7.5e-41 171.4 255 45.5
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 3.7e-40 169.1 268 44.8
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 8.3e-40 167.9 256 44.9
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 1.8e-39 166.8 258 44.6
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 1.8e-39 166.8 258 45.3
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.8e-39 166.8 264 43.6
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 4.1e-39 165.6 251 43.4
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 5.4e-39 165.2 256 43.4
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 5.4e-39 165.2 252 45.6
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 7.0e-39 164.9 261 44.1
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 9.2e-39 164.5 252 46.8
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.2e-38 164.1 259 44.8
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 4.6e-38 162.2 260 44.6
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 5.9e-38 161.8 252 44.8
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 7.8e-38 161.4 255 44.3
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 7.8e-38 161.4 256 42.6
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 7.8e-38 161.4 256 42.6
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 1.0e-37 161.0 252 44.0
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 1.3e-37 160.6 252 43.3
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 1.3e-37 160.6 252 44.8
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 1.7e-37 160.2 249 43.4
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.0e-37 159.5 254 43.7
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.9e-37 159.1 254 44.1
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 5.0e-37 158.7 254 44.1
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 5.0e-37 158.7 254 44.1
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 5.0e-37 158.7 254 44.1
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 5.0e-37 158.7 254 44.1
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 5.0e-37 158.7 257 43.6
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 6.6e-37 158.3 264 42.4
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 1.1e-36 157.5 253 43.1
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.5e-36 157.1 254 43.7
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 1.5e-36 157.1 258 44.6
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 3.3e-36 156.0 254 43.3
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 5.6e-36 155.2 255 44.3
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 5.6e-36 155.2 255 44.3
C07p31560 Brassica napus HOM05D000104 ORTHO05D004024 7.3e-36 154.8 85 92.9
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 7.3e-36 154.8 253 43.9
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 7.3e-36 154.8 252 42.9
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 9.5e-36 154.5 257 42.4
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 1.2e-35 154.1 254 43.3
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 1.6e-35 153.7 260 41.9
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 2.8e-35 152.9 250 43.2
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 2.8e-35 152.9 257 42.8
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 2.8e-35 152.9 248 42.3
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 4.7e-35 152.1 243 43.2
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 6.2e-35 151.8 247 42.5
Rhsim01G0162900 Rhododendron simsii HOM05D000104 ORTHO05D004024 6.2e-35 151.8 245 41.6
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 8.0e-35 151.4 247 42.5
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 8.0e-35 151.4 243 43.6
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 8.0e-35 151.4 231 44.6
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 1.0e-34 151.0 227 44.9
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 1.0e-34 151.0 246 42.7
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 1.4e-34 150.6 251 43.8
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 1.8e-34 150.2 254 44.9
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 2.3e-34 149.8 255 43.9
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 2.3e-34 149.8 250 42.4
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 6.8e-34 148.3 229 43.7
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 8.9e-34 147.9 249 43.4
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 8.9e-34 147.9 260 43.1
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 1.2e-33 147.5 250 42.4
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 1.5e-33 147.1 217 46.1
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 2.0e-33 146.7 250 42.8
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 2.6e-33 146.4 252 42.9
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 3.4e-33 146.0 230 45.7
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 4.4e-33 145.6 249 42.6
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 4.4e-33 145.6 264 40.5
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 9.8e-33 144.4 249 43.4
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 2.2e-32 143.3 247 40.9
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 2.9e-32 142.9 251 40.2
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 2.9e-32 142.9 249 42.6
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 4.9e-32 142.1 250 41.2
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 6.4e-32 141.7 258 42.6
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 6.4e-32 141.7 254 40.6
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 8.3e-32 141.4 259 41.7
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.1e-31 141.0 265 42.3
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 1.1e-31 141.0 251 43.4
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 2.4e-31 139.8 265 40.4
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 2.4e-31 139.8 263 40.7
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 3.2e-31 139.4 262 41.6
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 4.1e-31 139.0 250 42.0
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 5.4e-31 138.7 254 40.2
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 7.0e-31 138.3 242 41.7
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.2e-30 137.5 248 42.7
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 1.6e-30 137.1 251 40.2
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 3.5e-30 136.0 246 42.7
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 3.0e-29 132.9 251 39.0
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 3.0e-29 132.9 254 39.0
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 5.0e-29 132.1 214 44.9
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 8.6e-29 131.3 260 38.1
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 8.6e-29 131.3 250 40.8
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 1.9e-28 130.2 261 40.2
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.9e-28 130.2 260 39.6
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 3.3e-28 129.4 271 38.0
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 9.5e-28 127.9 217 43.3
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.2e-27 127.5 246 40.7
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 1.6e-27 127.1 249 40.6
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 2.8e-27 126.3 263 39.2
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 4.7e-27 125.6 248 39.9
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 6.2e-27 125.2 263 38.8
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 8.1e-27 124.8 231 40.7
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 1.1e-26 124.4 228 41.2
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 5.2e-26 122.1 211 41.2
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 1.5e-25 120.6 245 39.6
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 2.6e-25 119.8 265 35.5
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 2.9e-24 116.3 256 37.5
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 2.4e-23 113.2 258 37.2
HPP92_025794 Vanilla planifolia HOM05D000104 ORTHO05D004024 2.4e-23 113.2 258 37.2
SEGI_34234 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 1.2e-19 100.9 286 30.4
HanXRQChr16g0522411 Helianthus annuus HOM05D000104 ORTHO05D004024 1.2e-17 94.4 200 39.5
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 7.1e-15 85.1 63 63.5
SMO351G0468 Selaginella moellendorffii HOM05D000104 ORTHO05D004024 1.7e-13 80.5 238 33.6
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 5.1e-13 79.0 63 61.9
Pp3c13_14440 Physcomitrium patens HOM05D000104 ORTHO05D004024 2.5e-12 76.6 63 54.0
Pp3c3_15820 Physcomitrium patens HOM05D000104 ORTHO05D004024 7.3e-12 75.1 63 52.4
SEGI_32037 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 4.7e-11 72.4 60 56.7
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 1.4e-10 70.9 151 39.1
CBR_g12457 Chara braunii HOM05D000104 ORTHO05D004024 2.6e-09 66.6 63 47.6
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 3.4e-09 66.2 55 63.6
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 7.6e-09 65.1 33 93.9
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 9.9e-09 64.7 38 78.9
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 1.1e-07 61.2 55 60.0


User provided reference genes

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