Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1228.0 630 100.0
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1195.3 626 97.6
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 0.0e+00 1179.5 652 93.7
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1174.1 627 96.5
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 0.0e+00 1104.7 625 89.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 0.0e+00 1095.9 625 88.0
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 0.0e+00 1088.9 625 88.5
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 0.0e+00 1085.9 625 88.2
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 0.0e+00 1083.2 625 88.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 2.0e-307 1058.5 626 86.9
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 3.3e-294 1014.6 626 86.4
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 7.3e-294 1013.4 550 96.2
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 9.5e-294 1013.1 624 84.5
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 2.2e-266 922.2 623 74.8
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 4.6e-264 914.4 625 77.0
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 3.9e-239 831.6 623 68.1
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 6.5e-234 814.3 625 66.7
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.5e-233 812.4 625 66.6
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 1.6e-232 809.7 623 66.5
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.6e-232 809.7 624 66.7
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.8e-231 806.2 625 66.2
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 9.7e-230 800.4 621 66.0
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 2.6e-227 792.3 625 64.3
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 2.2e-226 789.3 622 65.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 5.0e-226 788.1 623 65.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.5e-222 776.5 622 63.8
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.0e-222 776.2 623 64.0
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.3e-221 773.5 616 65.1
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 6.3e-221 771.2 623 63.9
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 8.2e-221 770.8 623 64.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 1.4e-220 770.0 645 62.5
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 4.1e-220 768.5 625 64.6
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.0e-219 766.1 653 62.6
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 3.2e-217 758.8 623 63.6
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.4e-215 753.4 623 62.0
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.8e-215 753.1 625 63.2
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.8e-215 751.1 625 62.7
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 8.8e-215 750.7 625 62.9
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 8.8e-215 750.7 622 62.7
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-214 748.8 624 62.8
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-214 748.8 624 62.8
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.4e-212 742.7 623 61.6
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 5.4e-212 741.5 624 61.7
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.0e-211 739.6 625 61.0
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 2.0e-211 739.6 623 61.0
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 7.7e-211 737.6 621 61.0
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.7e-211 737.6 625 62.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 1.0e-210 737.3 623 61.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 1.1e-209 733.8 622 63.0
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.5e-209 732.6 623 60.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 4.2e-209 731.9 623 60.7
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.2e-208 730.3 624 60.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.2e-206 723.8 622 61.7
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 3.4e-206 722.2 625 60.0
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.8e-205 719.2 624 60.3
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.3e-205 718.0 626 60.9
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.1e-204 717.2 625 59.0
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.4e-204 716.8 625 61.0
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.8e-204 716.5 622 60.1
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 7.0e-204 714.5 624 59.3
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.7e-202 709.9 622 59.5
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 5.0e-202 708.4 627 57.9
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 6.6e-202 708.0 622 59.3
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.5e-201 706.1 621 59.1
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.5e-201 706.1 627 58.9
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.2e-200 703.7 625 59.5
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.6e-200 703.4 624 59.0
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.0e-199 700.7 623 57.6
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.8e-199 699.9 622 58.0
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.3e-199 699.5 623 59.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.2e-199 698.4 621 59.1
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.2e-198 697.2 621 59.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.3e-197 693.7 622 57.7
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.9e-197 692.6 621 58.8
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 6.4e-197 691.4 622 57.2
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 8.3e-197 691.0 624 60.1
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.4e-196 690.3 618 58.1
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.0e-196 688.0 625 59.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 2.7e-195 686.0 623 58.4
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.3e-194 683.7 622 57.9
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 2.9e-194 682.6 621 58.8
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.5e-193 679.5 620 56.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 4.3e-193 678.7 622 56.8
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.2e-192 677.2 623 57.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 2.1e-192 676.4 623 57.9
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.3e-191 672.9 622 56.1
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.4e-190 669.1 626 59.1
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.9e-189 665.2 588 58.5
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 2.3e-186 656.4 623 55.7
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 9.5e-185 651.0 625 55.0
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.4e-181 638.3 552 60.1
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.7e-178 630.2 585 57.8
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.1e-178 628.6 555 58.4
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 7.8e-171 604.7 708 48.0
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 4.0e-159 565.8 629 49.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.7e-155 553.1 619 51.1
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.2e-147 527.7 631 47.1
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.3e-146 524.2 631 46.8
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 9.0e-143 511.5 461 56.0
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 8.7e-138 495.0 554 48.4
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.9e-133 479.9 628 43.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.9e-130 469.5 486 52.7
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 4.6e-123 446.0 398 60.6
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 4.2e-116 422.9 583 43.2
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.7e-104 383.3 398 52.0
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 4.8e-96 356.3 637 38.3
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 8.8e-90 335.5 638 37.3
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 7.0e-87 325.9 483 43.1
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.3e-85 321.6 587 35.3
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-85 321.6 475 42.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 9.5e-84 315.5 277 58.8
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.9e-80 303.9 204 72.5
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.1e-63 248.8 380 42.6
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.1e-61 240.0 309 46.9
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 6.4e-56 223.0 142 71.1
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.9e-53 213.8 142 67.6
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.1e-52 212.2 701 28.5
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.5e-52 211.8 142 67.6
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.9e-52 211.5 142 66.9
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.6e-52 209.9 146 66.4
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.5e-41 175.3 181 52.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.0e-41 174.9 233 49.4
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.8e-40 170.6 146 57.5
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.4e-36 156.4 197 47.7
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 9.0e-34 149.4 170 49.4
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-33 149.1 245 36.3
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.4e-33 147.5 158 52.5
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 2.9e-24 117.9 73 80.8
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.3e-21 109.0 72 76.4
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.0e-17 95.1 60 73.3
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 9.1e-10 69.7 635 21.4
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.2e-09 69.3 49 67.3
C09p19940 Brassica napus HOM05D001640 ORTHO05D006644 2.7e-06 58.2 37 81.1


User provided reference genes

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