Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 0.0e+00 1305.4 657 100.0
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1123.2 701 83.2
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 0.0e+00 1119.8 701 83.0
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1116.7 701 82.9
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 0.0e+00 1112.8 695 82.7
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 0.0e+00 1094.3 710 80.7
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.8e-311 1072.0 745 76.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.3e-309 1065.8 699 78.4
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 3.0e-306 1054.7 713 76.7
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.7e-301 1038.9 709 76.6
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.6e-299 1032.3 693 77.2
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.9e-279 963.8 684 72.2
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 5.1e-266 921.0 706 67.0
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.4e-223 779.2 726 57.0
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.6e-222 776.5 728 56.2
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 4.6e-222 775.0 758 56.3
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 7.8e-222 774.2 745 56.0
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.0e-221 773.9 758 56.3
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 6.6e-221 771.2 754 54.9
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.5e-220 770.0 754 54.8
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.9e-220 769.6 751 55.9
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.6e-219 766.5 749 54.7
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 2.8e-219 765.8 744 55.4
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 4.7e-219 765.0 747 55.6
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 6.2e-219 764.6 755 54.6
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.8e-218 763.1 757 55.2
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.2e-217 760.4 724 55.0
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 2.0e-217 759.6 757 54.7
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 3.4e-217 758.8 753 55.1
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 4.9e-216 755.0 723 54.9
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.7e-214 749.2 748 55.1
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 2.7e-214 749.2 752 54.3
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 6.0e-214 748.0 750 54.0
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 6.0e-214 748.0 692 56.8
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.0e-213 747.3 750 55.3
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.3e-213 746.9 706 56.8
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.3e-213 746.1 758 54.7
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.0e-213 745.7 708 55.1
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 3.0e-213 745.7 744 53.4
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 3.9e-213 745.3 805 51.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 5.0e-213 745.0 726 54.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 6.6e-213 744.6 715 56.1
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 6.6e-213 744.6 733 55.1
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 8.6e-213 744.2 745 54.1
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.6e-213 744.2 759 54.0
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 8.6e-213 744.2 740 55.3
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.1e-212 743.8 702 56.0
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.5e-212 743.4 707 56.0
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.5e-212 743.4 749 53.3
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 4.3e-212 741.9 757 53.9
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 5.6e-212 741.5 750 54.7
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 5.6e-212 741.5 725 55.0
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 7.3e-212 741.1 751 53.1
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 7.3e-212 741.1 725 55.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 9.5e-212 740.7 728 54.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 2.1e-211 739.6 751 53.0
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 2.8e-211 739.2 744 54.0
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 3.6e-211 738.8 713 54.8
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.6e-211 738.8 757 54.6
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 6.2e-211 738.0 751 52.9
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 6.2e-211 738.0 751 52.9
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 6.2e-211 738.0 750 53.3
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 8.1e-211 737.6 732 53.7
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.1e-210 737.3 760 53.6
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 3.1e-210 735.7 750 53.5
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.2e-210 734.9 725 54.2
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 2.0e-209 733.0 703 55.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.4e-209 732.3 710 54.4
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.2e-208 729.6 722 54.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 2.9e-208 729.2 700 55.4
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 7.1e-207 724.5 759 52.0
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.6e-206 723.4 718 54.0
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 6.0e-206 721.5 773 52.1
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.3e-205 720.3 755 52.5
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.3e-205 719.5 717 54.1
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 4.7e-203 711.8 785 50.7
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.1e-202 710.7 730 52.3
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.7e-200 703.4 675 54.5
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.4e-199 700.3 771 50.3
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 4.1e-199 698.7 712 52.1
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.3e-197 693.0 696 54.2
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 3.0e-197 692.6 694 53.9
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.1e-194 684.1 753 51.3
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.7e-189 664.5 709 51.8
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.6e-187 660.2 727 51.0
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.6e-187 660.2 984 41.2
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 1.8e-186 656.8 706 49.4
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 6.9e-186 654.8 855 44.4
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.3e-181 640.6 943 42.5
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 6.4e-176 621.7 676 49.7
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 3.5e-174 615.9 654 53.5
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.9e-172 610.1 642 52.2
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.5e-169 600.5 716 50.0
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 2.2e-168 596.7 762 46.2
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 9.0e-162 574.7 596 51.5
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 9.3e-159 564.7 682 45.5
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 6.1e-150 535.4 742 42.7
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.4e-149 534.3 766 40.9
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 2.0e-148 530.4 552 53.4
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 5.7e-148 528.9 463 58.7
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.2e-143 512.7 683 43.8
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.6e-142 510.8 523 53.2
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.2e-133 479.2 590 49.2
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.5e-127 459.1 615 47.2
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 3.7e-123 446.4 391 59.3
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 2.3e-120 437.2 387 58.4
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-112 411.4 454 51.5
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.0e-112 409.5 449 52.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.2e-94 351.7 448 43.1
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.3e-88 331.6 163 100.0
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.2e-67 261.2 654 32.1
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.9e-64 250.4 195 67.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.5e-63 247.7 297 48.5
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.3e-63 246.9 250 52.4
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 6.9e-61 239.6 1029 24.0
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 4.5e-60 236.9 161 67.7
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 5.5e-58 229.9 647 29.5
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.1e-58 229.6 327 46.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-51 207.6 295 46.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.9e-51 207.6 236 48.7
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.2e-46 191.4 359 37.3
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 2.8e-46 191.0 143 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.4e-45 188.7 163 57.1
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.3e-38 165.6 124 62.9
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 4.7e-33 147.1 216 42.1
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-27 129.4 125 56.0
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.5e-27 126.7 125 56.8
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-26 125.9 219 37.4
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 8.2e-22 109.8 214 32.7
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.5e-20 104.0 87 66.7
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.9e-19 101.3 243 34.2
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 3.6e-17 94.4 136 41.9
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 1.4e-16 92.4 64 70.3
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.5e-15 86.7 64 68.8
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 5.0e-11 73.9 150 27.3
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 6.5e-11 73.6 155 27.7
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 8.5e-11 73.2 95 49.5
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 4.2e-10 70.9 123 30.9
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 9.4e-10 69.7 165 31.5
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.0e-08 66.2 193 29.5
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.3e-08 65.1 53 60.4
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.3e-08 65.1 53 60.4
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.8e-06 58.2 35 68.6


User provided reference genes

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