Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30444 Brassica carinata HOM05D001605 ORTHO05D094129 4.8e-82 307.8 153 100.0
BraA10t45232Z Brassica rapa HOM05D001605 ORTHO05D007904 9.8e-27 124.0 205 42.9
Sp6g38450 Schrenkiella parvula HOM05D001605 ORTHO05D007904 3.7e-26 122.1 231 40.3
A10p31880 Brassica napus HOM05D001605 ORTHO05D007904 6.4e-26 121.3 84 77.4
BcaC06g32133 Brassica carinata HOM05D001605 ORTHO05D007904 8.3e-26 120.9 84 78.6
C09p72590 Brassica napus HOM05D001605 ORTHO05D007904 8.3e-26 120.9 84 77.4
BolC9t59999H Brassica oleracea HOM05D001605 ORTHO05D007904 8.3e-26 120.9 84 77.4
Thhalv10015730m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 8.3e-26 120.9 185 44.9
Thhalv10015856m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 3.5e-24 115.5 84 72.6
AT5G04290 Arabidopsis thaliana HOM05D001605 ORTHO05D007904 2.5e-22 109.4 84 70.2
AL6G13920 Arabidopsis lyrata HOM05D001605 ORTHO05D007904 4.3e-22 108.6 84 69.0
Aa31LG1G21060 Aethionema arabicum HOM05D001605 ORTHO05D007904 9.5e-22 107.5 83 69.9
Carub.0006s0324 Capsella rubella HOM05D001605 ORTHO05D007904 1.6e-21 106.7 84 69.0
CARHR208990 Cardamine hirsuta HOM05D001605 ORTHO05D007904 2.8e-21 105.9 222 38.3
THA.LOC104816433 Tarenaya hassleriana HOM05D001605 ORTHO05D007904 5.8e-19 98.2 83 65.1
Actinidia18543 Actinidia chinensis HOM05D001605 ORTHO05D007904 9.2e-17 90.9 85 57.6
GSVIVG01016203001 Vitis vinifera HOM05D001605 ORTHO05D007904 1.7e-15 86.7 89 53.9
TWI15G0385 Tripterygium wilfordii HOM05D001605 ORTHO05D007904 2.3e-15 86.3 83 56.6
Solyc11g008150.3 Solanum lycopersicum HOM05D001605 ORTHO05D007904 3.9e-15 85.5 83 55.4
Sopen11g003960 Solanum pennellii HOM05D001605 ORTHO05D007904 3.9e-15 85.5 83 55.4
ClCG08G007840 Citrullus lanatus HOM05D001605 ORTHO05D007904 8.6e-15 84.3 134 38.8
Peaxi162Scf00145g00221 Petunia axillaris HOM05D001605 ORTHO05D007904 8.6e-15 84.3 89 52.8
Potri.008G032800 Populus trichocarpa HOM05D001605 ORTHO05D007904 8.6e-15 84.3 83 56.6
Potri.010G228766 Populus trichocarpa HOM05D001605 ORTHO05D007904 1.5e-14 83.6 83 56.6
arahy.Tifrunner.gnm1.ann1.MQG1NS Arachis hypogaea HOM05D001605 ORTHO05D007904 1.9e-14 83.2 91 51.6
arahy.Tifrunner.gnm1.ann1.NQY93W Arachis hypogaea HOM05D001605 ORTHO05D007904 1.9e-14 83.2 91 51.6
Manes.07G094600 Manihot esculenta HOM05D001605 ORTHO05D007904 1.9e-14 83.2 83 55.4
Thecc.10G086900 Theobroma cacao HOM05D001605 ORTHO05D007904 1.9e-14 83.2 134 39.6
QL08p053377 Quercus lobata HOM05D001605 ORTHO05D007904 2.5e-14 82.8 83 55.4
Nitab4.5_0002285g0040 Nicotiana tabacum HOM05D001605 ORTHO05D007904 3.3e-14 82.4 83 55.4
Ah.05g168450 Amaranthus hybridus HOM05D001605 ORTHO05D007904 4.3e-14 82.0 84 56.0
Sed0007773 Sechium edule HOM05D001605 ORTHO05D007904 5.6e-14 81.6 83 54.2
Dinv31241 Davidia involucrata HOM05D001605 ORTHO05D007904 7.3e-14 81.3 83 55.4
Rhsim09G0146800 Rhododendron simsii HOM05D001605 ORTHO05D007904 7.3e-14 81.3 83 51.8
vmacro10246 Vaccinium macrocarpon HOM05D001807 ORTHO05D002044 7.3e-14 81.3 83 50.6
CsaV3_2G021080 Cucumis sativus L. HOM05D001605 ORTHO05D007904 9.5e-14 80.9 83 51.8
Duzib114G0274 Durio zibethinus HOM05D001605 ORTHO05D007904 9.5e-14 80.9 134 39.6
Sabra08G0021700 Salix brachista HOM05D001605 ORTHO05D007904 9.5e-14 80.9 83 54.2
AUR62027342 Chenopodium quinoa HOM05D001605 ORTHO05D007904 1.2e-13 80.5 130 42.3
Nitab4.5_0004987g0010 Nicotiana tabacum HOM05D001605 ORTHO05D007904 1.6e-13 80.1 83 54.2
COL.COLO4_09867 Corchorus olitorius HOM05D001605 ORTHO05D007904 2.1e-13 79.7 83 53.0
Psat6g230120 Pisum sativum HOM05D001605 ORTHO05D007904 2.8e-13 79.3 83 51.8
Glyma.10G276900 Glycine max HOM05D001605 ORTHO05D007904 3.6e-13 79.0 83 53.0
Glyma.20G112800 Glycine max HOM05D001605 ORTHO05D007904 3.6e-13 79.0 83 53.0
Cc02_g10740 Coffea canephora HOM05D001605 ORTHO05D007904 4.7e-13 78.6 83 51.8
Lalb_Chr06g0166251 Lupinus albus HOM05D001605 ORTHO05D007904 4.7e-13 78.6 83 53.0
CAN.G459.35 Capsicum annuum HOM05D001605 ORTHO05D007904 8.1e-13 77.8 86 51.2
Ciclev10030480m.g Citrus clementina HOM05D001605 ORTHO05D007904 1.1e-12 77.4 83 53.0
Sc09g0005960 Simmondsia chinensis HOM05D001605 ORTHO05D007904 1.1e-12 77.4 83 53.0
Gohir.A10G201000 Gossypium hirsutum HOM05D001605 ORTHO05D007904 1.8e-12 76.6 134 38.1
Gohir.D10G208651 Gossypium hirsutum HOM05D001605 ORTHO05D007904 1.8e-12 76.6 134 38.1
Gorai.011G234600 Gossypium raimondii HOM05D001605 ORTHO05D007904 1.8e-12 76.6 134 38.1
TAR636G1950 Trochodendron aralioides HOM05D001605 ORTHO05D007904 1.8e-12 76.6 148 37.8
EL10Ac7g16663 Beta vulgaris HOM05D001605 ORTHO05D007904 2.3e-12 76.3 130 41.5
Rhsim03G0113100 Rhododendron simsii HOM05D001605 ORTHO05D007904 2.3e-12 76.3 113 41.6
Eucgr.J01043 Eucalyptus grandis HOM05D001605 ORTHO05D007904 5.2e-12 75.1 83 49.4
Atru.chr12.877 Acer truncatum HOM05D001605 ORTHO05D007904 6.8e-12 74.7 83 49.4
vmacro07188 Vaccinium macrocarpon HOM05D001605 ORTHO05D007904 6.8e-12 74.7 113 42.5
PGR044G1910 Punica granatum HOM05D001605 ORTHO05D007904 8.9e-12 74.3 83 51.8
DCAR_006401 Daucus carota HOM05D001605 ORTHO05D007904 1.2e-11 73.9 83 51.8
Phvul.007G024600 Phaseolus vulgaris HOM05D001605 ORTHO05D007904 1.2e-11 73.9 83 50.6
DCAR_024079 Daucus carota HOM05D001605 ORTHO05D007904 1.5e-11 73.6 137 38.7
MD01G1100800 Malus domestica HOM05D001605 ORTHO05D007904 1.5e-11 73.6 83 51.8
Medtr1g111560 Medicago truncatula HOM05D001605 ORTHO05D007904 2.0e-11 73.2 83 47.0
SGA_v2.0_scaffold62G21379 Striga asiatica HOM05D001605 ORTHO05D007904 2.0e-11 73.2 83 53.0
MD07G1167800 Malus domestica HOM05D001605 ORTHO05D007904 2.6e-11 72.8 83 51.8
Cfa001787 Carpinus fangiana HOM05D001605 ORTHO05D007904 4.4e-11 72.0 83 48.2
ECA238G1123 Erigeron canadensis HOM05D001605 ORTHO05D007904 4.4e-11 72.0 83 45.8
CiPaw.01G266900 Carya illinoinensis HOM05D001605 ORTHO05D007904 5.8e-11 71.6 83 49.4
Migut.F01946 Erythranthe guttata HOM05D001605 ORTHO05D007904 5.8e-11 71.6 83 50.6
Prupe.2G206300 Prunus persica HOM05D001605 ORTHO05D007904 7.6e-11 71.2 83 50.6
TPR.G26273 Trifolium pratense HOM05D001605 ORTHO05D007904 9.9e-11 70.9 83 47.0
MBI01_g12684_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D007904 1.7e-10 70.1 83 50.6
SalBow4G1337 Salvia bowleyana HOM05D001605 ORTHO05D007904 1.7e-10 70.1 83 48.2
HPP92_015889 Vanilla planifolia HOM05D001605 ORTHO05D007904 2.2e-10 69.7 83 48.2
Hund17736 Selenicereus undatus HOM05D001605 ORTHO05D007904 2.9e-10 69.3 84 48.8
HPP92_015895 Vanilla planifolia HOM05D001605 ORTHO05D007904 3.8e-10 68.9 83 47.0
Ca_25646_v3 Cicer arietinum L. HOM05D001605 ORTHO05D007904 4.9e-10 68.6 83 45.8
Zm00001eb352910 Zea mays HOM05D001605 ORTHO05D007904 4.9e-10 68.6 83 48.2
FvH4_7g18411 Fragaria vesca HOM05D001605 ORTHO05D007904 8.4e-10 67.8 79 50.6
FAN01G1699 Fragaria x ananassa HOM05D001605 ORTHO05D007904 8.4e-10 67.8 79 50.6
FAN06G2826 Fragaria x ananassa HOM05D001605 ORTHO05D007904 8.4e-10 67.8 79 50.6
RcHm_v2.0_Chr1g0362241 Rosa chinensis HOM05D001605 ORTHO05D007904 8.4e-10 67.8 83 49.4
FAN03G0306 Fragaria x ananassa HOM05D001605 ORTHO05D007904 1.4e-09 67.0 79 50.6
FAN10G1517 Fragaria x ananassa HOM05D001605 ORTHO05D007904 1.4e-09 67.0 79 50.6
Nn2g13838 Nelumbo nucifera HOM05D001605 ORTHO05D007904 1.4e-09 67.0 83 49.4
CDE02G1882 Ceratophyllum demersum HOM05D001605 ORTHO05D007904 1.9e-09 66.6 83 48.2
HanXRQChr14g0456521 Helianthus annuus HOM05D001605 ORTHO05D007904 4.1e-09 65.5 83 44.6
Lj5g0010311 Lotus japonicus HOM05D001605 ORTHO05D007904 7.1e-09 64.7 83 48.2
Zm00001eb292250 Zea mays HOM05D001605 ORTHO05D007904 7.1e-09 64.7 83 47.0
MBI06_g09273_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D007904 9.2e-09 64.3 80 50.0
PSO063G0750 Papaver somniferum HOM05D001605 ORTHO05D007904 1.2e-08 63.9 83 47.0
Lj2A22T71 Lonicera japonica HOM05D001605 ORTHO05D007904 1.6e-08 63.5 83 45.8
PSO339G4771 Papaver somniferum HOM05D001605 ORTHO05D007904 1.6e-08 63.5 83 45.8
Lsat_1_v5_gn_2_112001 Lactuca sativa HOM05D001605 ORTHO05D007904 6.0e-08 61.6 82 42.7
ATR0665G492 Amborella trichopoda HOM05D001605 ORTHO05D007904 1.9e-06 56.6 83 41.0
CSS0045023 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D007904 2.5e-06 56.2 42 64.3
unitig_37.g12317 Utricularia gibba HOM05D001605 ORTHO05D007904 4.3e-06 55.5 71 45.1
Aqoxy2G01687_Aqoxy2G01688 Aquilegia oxysepala HOM05D001605 ORTHO05D007904 9.6e-06 54.3 80 37.5


User provided reference genes

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