Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 7.0e-87 323.9 166 100.0
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 4.6e-70 268.1 202 76.2
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 3.0e-69 265.4 207 74.4
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 8.3e-64 247.3 203 69.0
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 3.4e-57 225.3 114 100.0
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 2.3e-45 186.0 201 57.2
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 8.7e-45 184.1 198 57.1
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 4.3e-44 181.8 197 54.3
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 1.1e-31 140.6 121 64.5
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 3.2e-23 112.5 150 48.0
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 7.1e-23 111.3 161 45.3
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.2e-22 110.5 145 46.2
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 1.6e-22 110.2 141 49.6
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.1e-22 109.8 173 43.9
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 2.1e-22 109.8 173 43.9
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.7e-22 109.4 161 44.7
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 2.7e-22 109.4 141 48.9
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 2.7e-22 109.4 157 47.8
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 3.5e-22 109.0 161 44.7
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 3.5e-22 109.0 139 48.9
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 4.6e-22 108.6 164 44.5
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 6.1e-22 108.2 157 47.1
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 7.9e-22 107.8 155 48.4
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 7.9e-22 107.8 155 48.4
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 7.9e-22 107.8 154 46.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 7.9e-22 107.8 161 45.3
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 7.9e-22 107.8 147 48.3
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.0e-21 107.5 173 45.1
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 2.3e-21 106.3 160 45.6
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 2.3e-21 106.3 161 44.7
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 2.3e-21 106.3 161 44.7
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.0e-21 105.9 161 45.3
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 3.9e-21 105.5 161 44.1
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 3.9e-21 105.5 161 45.3
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.1e-21 105.1 161 45.3
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 6.7e-21 104.8 155 45.8
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 8.7e-21 104.4 139 47.5
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 8.7e-21 104.4 153 45.8
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 8.7e-21 104.4 161 43.5
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.5e-20 103.6 153 44.4
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.5e-20 103.6 153 44.4
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.5e-20 103.6 153 44.4
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.5e-20 103.6 161 44.1
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 1.5e-20 103.6 153 43.8
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 1.9e-20 103.2 139 47.5
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.9e-20 103.2 139 47.5
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.9e-20 103.2 139 47.5
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 1.9e-20 103.2 161 44.1
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 2.5e-20 102.8 144 47.2
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.5e-20 102.8 146 45.9
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 2.5e-20 102.8 180 38.9
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 3.3e-20 102.4 161 42.9
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.3e-20 102.4 160 42.5
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 4.3e-20 102.1 144 47.2
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 5.7e-20 101.7 161 43.5
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 5.7e-20 101.7 157 44.6
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 7.4e-20 101.3 158 44.3
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.7e-20 100.9 139 47.5
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.3e-19 100.5 160 41.9
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.3e-19 100.5 160 41.9
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 1.6e-19 100.1 141 46.1
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.2e-19 99.8 144 45.8
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.2e-19 99.8 144 45.8
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 2.8e-19 99.4 141 46.1
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 3.7e-19 99.0 161 42.9
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 3.7e-19 99.0 161 42.9
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 4.8e-19 98.6 154 42.9
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 4.8e-19 98.6 137 47.4
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 6.3e-19 98.2 139 45.3
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 8.2e-19 97.8 147 44.9
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 1.1e-18 97.4 151 43.7
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.1e-18 97.4 147 42.2
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.1e-18 97.4 147 42.2
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 1.1e-18 97.4 157 45.2
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 1.1e-18 97.4 161 42.2
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.4e-18 97.1 157 45.2
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.4e-18 97.1 141 46.1
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.8e-18 96.7 161 40.4
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.4e-18 96.3 149 43.0
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.4e-18 96.3 147 41.5
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 4.1e-18 95.5 161 43.5
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 5.3e-18 95.1 153 41.8
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 6.9e-18 94.7 145 42.8
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 6.9e-18 94.7 137 40.1
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 6.9e-18 94.7 137 40.1
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 9.0e-18 94.4 161 40.4
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.2e-17 94.0 139 44.6
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.2e-17 94.0 139 44.6
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.5e-17 93.6 171 38.6
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.5e-17 93.6 150 40.7
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.5e-17 93.6 141 44.0
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.0e-17 93.2 161 42.9
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 2.0e-17 93.2 139 44.6
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.4e-17 92.4 136 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 5.9e-17 91.7 136 44.1
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.9e-17 91.7 166 42.2
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 7.7e-17 91.3 161 43.5
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.0e-16 90.9 186 38.7
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 1.0e-16 90.9 184 39.1
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 1.0e-16 90.9 182 39.0
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.0e-16 90.9 161 38.5
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 1.3e-16 90.5 187 39.0
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.7e-16 90.1 187 39.0
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.2e-16 89.7 187 39.0
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 2.9e-16 89.4 129 43.4
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 2.9e-16 89.4 161 42.2
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 3.8e-16 89.0 141 42.6
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.8e-16 89.0 188 38.8
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 3.8e-16 89.0 130 45.4
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.8e-16 89.0 155 41.9
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 5.0e-16 88.6 162 38.3
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 6.5e-16 88.2 137 41.6
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 6.5e-16 88.2 166 41.6
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 8.5e-16 87.8 166 41.0
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 3.2e-15 85.9 139 41.0
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 3.2e-15 85.9 134 41.8
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 3.2e-15 85.9 136 41.2
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 5.5e-15 85.1 136 44.1
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 5.5e-15 85.1 136 44.1
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 7.2e-15 84.7 140 45.0
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 9.4e-15 84.3 111 47.7
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.6e-14 83.6 161 40.4
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 2.7e-14 82.8 183 38.3
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 2.7e-14 82.8 152 39.5
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 6.1e-14 81.6 121 40.5
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 1.4e-13 80.5 150 38.7
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.0e-13 79.3 112 48.2
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 3.0e-13 79.3 127 42.5
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 8.8e-13 77.8 110 45.5
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 8.8e-13 77.8 125 36.0
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.1e-12 77.4 113 47.8
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 1.5e-12 77.0 138 40.6
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 7.4e-12 74.7 161 36.0
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 6.3e-11 71.6 131 40.5
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.1e-10 70.9 136 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.8e-10 70.1 136 39.7
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 3.1e-10 69.3 162 34.6
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 4.1e-10 68.9 142 37.3
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 5.3e-10 68.6 162 34.0
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 6.9e-10 68.2 140 37.1
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 2.0e-09 66.6 121 38.8
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 3.4e-09 65.9 80 47.5
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 4.5e-09 65.5 94 42.6
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 4.5e-09 65.5 95 42.1
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.2e-08 63.2 94 41.5
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 2.9e-08 62.8 92 41.3
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 3.8e-08 62.4 147 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 5.0e-08 62.0 108 42.6
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.9e-07 60.1 86 45.3
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.9e-07 60.1 92 40.2
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 4.2e-07 58.9 50 58.0
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 7.2e-07 58.2 85 48.2
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 7.2e-07 58.2 50 58.0
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.6e-06 55.8 70 45.7
Sp3g12930 Schrenkiella parvula HOM05D003241 ORTHO05D003812 6.1e-06 55.1 163 33.1


User provided reference genes

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