Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 2.5e-74 282.0 135 100.0
C05p46940 Brassica napus HOM05D015584 ORTHO05D016118 7.3e-34 147.5 71 100.0
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 3.1e-24 115.5 54 100.0
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 3.1e-24 115.5 54 100.0
A01p34900 Brassica napus HOM05D015584 ORTHO05D016118 8.4e-22 107.5 66 81.8
A02p34010 Brassica napus HOM05D015584 ORTHO05D016118 8.4e-22 107.5 66 81.8
A05p20440 Brassica napus HOM05D015584 ORTHO05D016118 8.4e-22 107.5 66 81.8
C04p11030 Brassica napus HOM05D015584 ORTHO05D016118 1.9e-21 106.3 66 81.8
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 9.6e-18 94.0 74 67.6
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 5.3e-16 88.2 40 97.5
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 5.3e-16 88.2 40 97.5
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 5.3e-16 88.2 40 97.5
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 5.3e-16 88.2 40 97.5
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 9.0e-16 87.4 40 95.0
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 9.0e-16 87.4 40 95.0
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.2e-15 87.0 40 95.0
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 3.8e-14 82.0 40 90.0
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 3.8e-14 82.0 40 90.0
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 6.4e-14 81.3 40 87.5
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 6.4e-14 81.3 40 87.5
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 6.4e-14 81.3 40 87.5
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 6.4e-14 81.3 40 87.5
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 8.4e-14 80.9 40 87.5
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 8.4e-14 80.9 40 87.5
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 8.4e-14 80.9 40 87.5
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 8.4e-14 80.9 40 87.5
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.4e-13 80.1 40 85.0
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 1.9e-13 79.7 40 85.0
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.9e-13 79.7 40 85.0
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 3.2e-13 79.0 40 82.5
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 3.2e-13 79.0 50 74.0
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 4.2e-13 78.6 40 82.5
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 4.2e-13 78.6 40 82.5
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 4.2e-13 78.6 39 84.6
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 7.1e-13 77.8 40 82.5
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 7.1e-13 77.8 40 82.5
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 7.1e-13 77.8 40 82.5
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 7.1e-13 77.8 40 80.0
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 7.1e-13 77.8 40 80.0
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 1.2e-12 77.0 40 80.0
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 1.6e-12 76.6 33 100.0
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 1.6e-12 76.6 40 85.0
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 1.6e-12 76.6 33 100.0
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 1.6e-12 76.6 40 85.0
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.6e-12 76.6 40 85.0
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 2.1e-12 76.3 53 60.4
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 2.1e-12 76.3 40 80.0
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 2.7e-12 75.9 42 76.2
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 82.5
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 82.5
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 82.5
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 82.5
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 82.5
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 3.5e-12 75.5 48 66.7
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 3.5e-12 75.5 48 66.7
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 77.5
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 3.5e-12 75.5 40 77.5
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 4.6e-12 75.1 39 79.5
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 4.6e-12 75.1 39 79.5
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 4.6e-12 75.1 40 77.5
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 4.6e-12 75.1 40 77.5
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.6e-12 75.1 40 77.5
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.6e-12 75.1 40 77.5
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 4.6e-12 75.1 40 77.5
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 4.6e-12 75.1 40 77.5
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 6.0e-12 74.7 40 75.0
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 7.9e-12 74.3 39 79.5
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.0e-11 73.9 40 75.0
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.0e-11 73.9 40 77.5
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 1.0e-11 73.9 48 66.7
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.0e-11 73.9 40 75.0
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.0e-11 73.9 40 75.0
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 1.0e-11 73.9 39 76.9
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.0e-11 73.9 39 76.9
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.0e-11 73.9 39 76.9
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.0e-11 73.9 40 75.0
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.0e-11 73.9 40 75.0
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 1.3e-11 73.6 50 66.0
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 1.8e-11 73.2 48 66.7
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 1.8e-11 73.2 40 77.5
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 2.3e-11 72.8 119 41.2
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 2.3e-11 72.8 40 75.0
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 2.3e-11 72.8 46 67.4
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 2.3e-11 72.8 40 77.5
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 2.3e-11 72.8 93 44.1
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 3.9e-11 72.0 40 75.0
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.9e-11 72.0 40 75.0
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.9e-11 72.0 40 75.0
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.9e-11 72.0 40 75.0
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 5.1e-11 71.6 40 75.0
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 5.1e-11 71.6 42 73.8
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 6.7e-11 71.2 34 82.4
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 6.7e-11 71.2 47 66.0
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 6.7e-11 71.2 47 66.0
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 6.7e-11 71.2 40 72.5
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 6.7e-11 71.2 40 75.0
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 6.7e-11 71.2 50 68.0
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 6.7e-11 71.2 39 74.4
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 8.7e-11 70.9 33 90.9
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 8.7e-11 70.9 40 72.5
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 8.7e-11 70.9 40 72.5
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 8.7e-11 70.9 40 72.5
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 8.7e-11 70.9 39 74.4
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 8.7e-11 70.9 39 74.4
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 8.7e-11 70.9 39 76.9
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 8.7e-11 70.9 39 76.9
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.1e-10 70.5 39 76.9
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.1e-10 70.5 39 74.4
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 1.1e-10 70.5 39 74.4
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 1.1e-10 70.5 39 74.4
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 1.1e-10 70.5 40 75.0
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.1e-10 70.5 48 62.5
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.1e-10 70.5 48 62.5
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.1e-10 70.5 48 62.5
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.1e-10 70.5 47 63.8
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.1e-10 70.5 40 75.0
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.1e-10 70.5 40 72.5
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.5e-10 70.1 40 72.5
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.5e-10 70.1 40 72.5
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 1.5e-10 70.1 39 74.4
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.5e-10 70.1 42 69.0
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 1.9e-10 69.7 39 74.4
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.9e-10 69.7 40 72.5
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.9e-10 69.7 40 72.5
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.9e-10 69.7 40 72.5
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 2.5e-10 69.3 40 70.0
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.5e-10 69.3 40 70.0
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 2.5e-10 69.3 40 75.0
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 2.5e-10 69.3 40 72.5
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.3e-10 68.9 40 72.5
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.3e-10 68.9 40 70.0
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 3.3e-10 68.9 40 70.0
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 3.3e-10 68.9 40 72.5
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 4.3e-10 68.6 39 71.8
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 5.6e-10 68.2 39 74.4
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 5.6e-10 68.2 39 74.4
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 5.6e-10 68.2 40 72.5
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 5.6e-10 68.2 40 72.5
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 5.6e-10 68.2 40 72.5
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 7.4e-10 67.8 39 74.4
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 7.4e-10 67.8 39 74.4
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 7.4e-10 67.8 39 74.4
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 7.4e-10 67.8 40 72.5
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.4e-10 67.8 40 70.0
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.4e-10 67.8 40 70.0
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.4e-10 67.8 40 70.0
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.4e-10 67.8 40 70.0
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 9.6e-10 67.4 40 72.5
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 9.6e-10 67.4 40 70.0
BolC7t43745H Brassica oleracea HOM05D015584 ORTHO05D016118 1.3e-09 67.0 34 88.2
BraA01t03572Z Brassica rapa HOM05D015584 ORTHO05D016118 1.3e-09 67.0 34 88.2
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.3e-09 67.0 39 69.2
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.6e-09 66.6 39 71.8
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 2.1e-09 66.2 40 67.5
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 2.8e-09 65.9 52 55.8
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 2.8e-09 65.9 39 71.8
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 6.2e-09 64.7 47 61.7
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 8.2e-09 64.3 35 77.1
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 8.2e-09 64.3 40 65.0
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 1.1e-08 63.9 40 65.0
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 1.1e-08 63.9 40 65.0
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 2.4e-08 62.8 33 75.8
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 4.0e-08 62.0 39 66.7
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 4.0e-08 62.0 40 65.0
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 1.5e-07 60.1 44 70.5
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 1.5e-07 60.1 44 70.5
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 4.5e-07 58.5 39 69.2
A06p33590 Brassica napus HOM05D010170 ORTHO05D012054 4.5e-07 58.5 74 50.0
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 4.5e-07 58.5 44 68.2
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 4.5e-07 58.5 44 70.5
BraA06t26296Z Brassica rapa HOM05D010170 ORTHO05D012054 4.5e-07 58.5 74 50.0
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 4.5e-07 58.5 35 74.3
BcaC09g51502 Brassica carinata HOM05D010718 ORTHO05D008037 1.0e-06 57.4 44 68.2
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 1.3e-06 57.0 39 61.5
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 2.9e-06 55.8 43 60.5
A09p35070 Brassica napus HOM05D010170 ORTHO05D008037 4.9e-06 55.1 43 67.4
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 4.9e-06 55.1 35 65.7
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 8.4e-06 54.3 32 68.8


User provided reference genes

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