Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27463 Brassica carinata HOM05D000327 ORTHO05D031721 3.5e-73 278.1 131 100.0
AL7G34370 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 1.3e-24 116.7 167 41.3
AT4G19670 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 3.0e-24 115.5 167 40.7
BcaC06g30628 Brassica carinata HOM05D000327 ORTHO05D000218 8.7e-24 114.0 163 42.9
Sp7g18240 Schrenkiella parvula HOM05D000327 ORTHO05D000218 8.7e-24 114.0 167 41.3
Thhalv10024888m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 5.6e-23 111.3 167 40.7
Carub.0007s2148 Capsella rubella HOM05D000327 ORTHO05D000218 3.1e-21 105.5 167 39.5
BcaNung01758 Brassica carinata HOM05D000327 ORTHO05D000218 7.6e-20 100.9 171 38.6
CARHR226490 Cardamine hirsuta HOM05D000327 ORTHO05D000218 1.3e-19 100.1 172 38.4
A01p11590 Brassica napus HOM05D000327 ORTHO05D000218 2.2e-19 99.4 156 39.7
C01p13680 Brassica napus HOM05D000327 ORTHO05D000218 2.9e-19 99.0 156 39.7
BolC1t01342H Brassica oleracea HOM05D000327 ORTHO05D000218 2.9e-19 99.0 156 39.7
BcaC09g51386 Brassica carinata HOM05D000327 ORTHO05D000218 6.5e-19 97.8 156 39.7
BraA01t01107Z Brassica rapa HOM05D000327 ORTHO05D000218 6.5e-19 97.8 156 40.4
C05p34240 Brassica napus HOM05D030087 ORTHO05D031721 1.5e-15 86.7 39 92.3
BolC5t32156H Brassica oleracea HOM05D000327 ORTHO05D031721 1.5e-15 86.7 39 92.3
COL.COLO4_30955 Corchorus olitorius HOM05D000327 ORTHO05D000218 3.1e-13 79.0 162 37.7
Aa31LG6G2220 Aethionema arabicum HOM05D000327 ORTHO05D000218 5.3e-13 78.2 171 34.5
CSS0005495 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 5.3e-13 78.2 162 37.7
Duzib160G0717 Durio zibethinus HOM05D000327 ORTHO05D000218 5.3e-13 78.2 162 37.0
Duzib192G0490 Durio zibethinus HOM05D000327 ORTHO05D000218 5.3e-13 78.2 162 38.3
THA.LOC104811473 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 5.3e-13 78.2 168 35.1
CSS0048794 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 9.0e-13 77.4 162 37.0
RcHm_v2.0_Chr5g0019691 Rosa chinensis HOM05D000327 ORTHO05D000218 9.0e-13 77.4 160 38.8
CSS0027721 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.2e-12 77.0 162 37.7
Medtr2g028870 Medicago truncatula HOM05D000327 ORTHO05D000218 1.2e-12 77.0 154 37.7
Thecc.06G138800 Theobroma cacao HOM05D000327 ORTHO05D000218 1.2e-12 77.0 162 37.7
GSVIVG01026257001 Vitis vinifera HOM05D000327 ORTHO05D000218 1.2e-12 77.0 164 36.6
FAN25G1512 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.5e-12 76.6 160 38.1
Gorai.009G150700 Gossypium raimondii HOM05D000327 ORTHO05D000218 1.5e-12 76.6 162 37.0
FAN16G2897 Fragaria x ananassa HOM05D000327 ORTHO05D000218 2.0e-12 76.3 160 38.1
Ca_11353_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 2.6e-12 75.9 154 35.7
Eucgr.D01052 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.6e-12 75.9 162 35.8
TPR.G17509 Trifolium pratense HOM05D000327 ORTHO05D000218 2.6e-12 75.9 154 36.4
FvH4_3g12010 Fragaria vesca HOM05D000327 ORTHO05D000218 3.4e-12 75.5 160 38.1
Gohir.D05G146800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 3.4e-12 75.5 162 36.4
Gohir.A05G144400 Gossypium hirsutum HOM05D000327 ORTHO05D000218 4.5e-12 75.1 162 36.4
FAN21G1375 Fragaria x ananassa HOM05D000327 ORTHO05D000218 5.9e-12 74.7 160 37.5
TAR626G1690 Trochodendron aralioides HOM05D000327 ORTHO05D000218 5.9e-12 74.7 162 35.8
TAR627G1088 Trochodendron aralioides HOM05D000327 ORTHO05D000218 7.6e-12 74.3 162 36.4
Atru.chr10.604 Acer truncatum HOM05D000327 ORTHO05D000218 1.7e-11 73.2 162 33.3
Prupe.4G108300 Prunus persica HOM05D000327 ORTHO05D000218 1.7e-11 73.2 164 37.2
MELO3C021806.2 Cucumis melo HOM05D000327 ORTHO05D000218 2.2e-11 72.8 162 36.4
Manes.16G047576 Manihot esculenta HOM05D000327 ORTHO05D000218 2.2e-11 72.8 162 37.0
Potri.012G119000 Populus trichocarpa HOM05D000327 ORTHO05D000218 2.2e-11 72.8 162 37.0
ClCG01G009130 Citrullus lanatus HOM05D000327 ORTHO05D000218 2.9e-11 72.4 162 36.4
Ciclev10014925m.g Citrus clementina HOM05D000327 ORTHO05D000218 6.5e-11 71.2 161 36.6
Nn7g38067 Nelumbo nucifera HOM05D000327 ORTHO05D000218 6.5e-11 71.2 162 35.2
Potri.015G117600 Populus trichocarpa HOM05D000327 ORTHO05D000218 6.5e-11 71.2 162 35.8
TWI38G1261 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 6.5e-11 71.2 162 35.8
MSTRG.16335 Avicennia marina HOM05D000327 ORTHO05D000218 8.4e-11 70.9 157 33.1
Hma1.2p1_0092F.1_g046800 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.1e-10 70.5 162 35.2
MD10G1236000 Malus domestica HOM05D000327 ORTHO05D000218 1.1e-10 70.5 163 38.0
Sed0016472 Sechium edule HOM05D000327 ORTHO05D000218 1.4e-10 70.1 162 35.8
CsaV3_1G046510 Cucumis sativus L. HOM05D000327 ORTHO05D000218 1.9e-10 69.7 162 35.8
PGR083G0861 Punica granatum HOM05D000327 ORTHO05D000218 1.9e-10 69.7 165 30.9
Actinidia22379 Actinidia chinensis HOM05D000327 ORTHO05D000218 3.2e-10 68.9 162 34.6
MD05G1255900 Malus domestica HOM05D000327 ORTHO05D000218 3.2e-10 68.9 165 34.5
BraA03t14283Z Brassica rapa HOM05D000327 ORTHO05D000218 4.2e-10 68.6 48 68.8
CiPaw.09G079300 Carya illinoinensis HOM05D000327 ORTHO05D000218 4.2e-10 68.6 161 32.3
PSO675G0479 Papaver somniferum HOM05D000327 ORTHO05D000218 4.2e-10 68.6 174 32.8
Rhsim13G0129700 Rhododendron simsii HOM05D000327 ORTHO05D000218 4.2e-10 68.6 169 31.4
Sed0026999 Sechium edule HOM05D000327 ORTHO05D000218 4.2e-10 68.6 162 35.2
BcaB04g17523 Brassica carinata HOM05D000327 ORTHO05D000218 5.5e-10 68.2 30 93.3
Psat1g169960 Pisum sativum HOM05D000327 ORTHO05D000218 5.5e-10 68.2 147 36.1
QL11p018227 Quercus lobata HOM05D000327 ORTHO05D000218 5.5e-10 68.2 162 35.2
Sabra12G0089700 Salix brachista HOM05D000327 ORTHO05D000218 5.5e-10 68.2 162 31.5
CANSAT35G0541 Cannabis sativa HOM05D000327 ORTHO05D000218 7.2e-10 67.8 162 32.7
Duzib235G0173 Durio zibethinus HOM05D000327 ORTHO05D000218 7.2e-10 67.8 162 35.8
PSO541G6330 Papaver somniferum HOM05D000327 ORTHO05D000218 7.2e-10 67.8 174 32.8
BcaC02g10239 Brassica carinata HOM05D023822 ORTHO05D000218 9.3e-10 67.4 77 51.9
Solyc02g069230.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 9.3e-10 67.4 162 34.0
Sopen02g018390 Solanum pennellii HOM05D000327 ORTHO05D000218 9.3e-10 67.4 162 34.0
Lalb_Chr16g0385331 Lupinus albus HOM05D000327 ORTHO05D000218 1.2e-09 67.0 162 34.6
Glyma.15G126500 Glycine max HOM05D000327 ORTHO05D000218 2.1e-09 66.2 162 35.8
MBI18_g04365_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 2.1e-09 66.2 162 33.3
PGSC0003DMG400021214 Solanum tuberosum HOM05D000327 ORTHO05D000218 2.7e-09 65.9 162 34.6
Aqoxy1G01492 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 3.5e-09 65.5 160 31.9
CSS0019482 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.5e-09 65.5 164 33.5
CSS0046162 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.5e-09 65.5 164 33.5
Phvul.006G131900 Phaseolus vulgaris HOM05D000327 ORTHO05D000218 3.5e-09 65.5 162 35.2
CAN.G1202.9 Capsicum annuum HOM05D000327 ORTHO05D000218 4.6e-09 65.1 162 33.3
Cfa000730 Carpinus fangiana HOM05D000327 ORTHO05D000218 4.6e-09 65.1 161 30.4
CiPaw.10G065900 Carya illinoinensis HOM05D000327 ORTHO05D000218 4.6e-09 65.1 162 35.2
Nitab4.5_0001876g0070 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.6e-09 65.1 162 34.6
VMungo0540G1796 Vigna mungo HOM05D000327 ORTHO05D000218 6.1e-09 64.7 162 35.8
vmacro03500 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 7.9e-09 64.3 170 30.0
Nitab4.5_0003027g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.0e-08 63.9 162 34.0
Haze_06012 Corylus avellana HOM05D000327 ORTHO05D000218 1.3e-08 63.5 161 29.8
Peaxi162Scf00623g00313 Petunia axillaris HOM05D000327 ORTHO05D000218 1.8e-08 63.2 162 33.3
Sc21g0004370 Simmondsia chinensis HOM05D000327 ORTHO05D000218 3.0e-08 62.4 162 29.6
FAN16G2218 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.9e-08 62.0 36 72.2
AUR62036831 Chenopodium quinoa HOM05D000327 ORTHO05D000218 5.1e-08 61.6 162 27.8
Gorai.010G169300 Gossypium raimondii HOM05D000327 ORTHO05D000218 8.7e-08 60.8 150 31.3
Lj6g0022216 Lotus japonicus HOM05D000327 ORTHO05D000218 8.7e-08 60.8 156 31.4
EL10Ac7g17231 Beta vulgaris HOM05D000327 ORTHO05D000218 1.1e-07 60.5 162 27.8
Lalb_Chr09g0328781 Lupinus albus HOM05D000327 ORTHO05D000218 1.5e-07 60.1 155 30.3
Dinv11865 Davidia involucrata HOM05D000327 ORTHO05D000218 2.5e-07 59.3 36 66.7
SGA_v2.0_scaffold535G52769 Striga asiatica HOM05D000327 ORTHO05D000218 2.5e-07 59.3 163 30.7
Glyma.09G020000 Glycine max HOM05D000327 ORTHO05D000218 3.3e-07 58.9 155 34.8
Gohir.D06G145450 Gossypium hirsutum HOM05D000327 ORTHO05D000218 3.3e-07 58.9 155 28.4
HanXRQChr14g0447551 Helianthus annuus HOM05D000327 ORTHO05D000218 3.3e-07 58.9 167 28.7
Ca_18777_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 4.3e-07 58.5 164 29.9
DCAR_007792 Daucus carota HOM05D000327 ORTHO05D000218 4.3e-07 58.5 162 30.2
DCAR_004315 Daucus carota HOM05D000327 ORTHO05D000218 5.7e-07 58.2 36 61.1
Migut.M01965 Erythranthe guttata HOM05D000327 ORTHO05D000218 5.7e-07 58.2 158 29.1
Lj1A1142T64 Lonicera japonica HOM05D000327 ORTHO05D000218 9.7e-07 57.4 166 30.1
AUR62043132 Chenopodium quinoa HOM05D000327 ORTHO05D000218 1.3e-06 57.0 162 28.4
ECA238G3547 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.3e-06 57.0 167 28.7
Sabra15G0135800 Salix brachista HOM05D000327 ORTHO05D000218 2.2e-06 56.2 33 69.7
SEGI_07561 Sequoiadendron giganteum HOM05D000327 ORTHO05D000218 2.2e-06 56.2 35 65.7
Cpa.g.sc135.38 Carica papaya HOM05D000327 ORTHO05D000218 2.8e-06 55.8 36 61.1
Cc09_g06790 Coffea canephora HOM05D000327 ORTHO05D000218 2.8e-06 55.8 162 32.7


User provided reference genes

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