Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27014 Brassica carinata HOM05D012303 ORTHO05D014119 5.9e-55 217.2 105 100.0
BcaC01g00400 Brassica carinata HOM05D012303 ORTHO05D014119 1.6e-52 209.1 105 95.2
BcaC02g08510 Brassica carinata HOM05D012303 ORTHO05D014119 4.6e-52 207.6 105 95.2
C05p28810 Brassica napus HOM05D012303 ORTHO05D014119 2.9e-46 188.3 88 100.0
BolC5t31598H Brassica oleracea HOM05D012303 ORTHO05D014119 2.9e-46 188.3 88 100.0
C03p79310 Brassica napus HOM05D012303 ORTHO05D014119 9.4e-45 183.3 88 96.6
BolC3t20174H Brassica oleracea HOM05D012303 ORTHO05D014119 1.2e-44 183.0 87 96.6
BolC4t26913H Brassica oleracea HOM05D012303 ORTHO05D014119 7.9e-44 180.3 88 95.5
BolC8t50674H Brassica oleracea HOM05D012303 ORTHO05D014119 2.3e-43 178.7 88 95.5
C04p53580 Brassica napus HOM05D012303 ORTHO05D014119 1.5e-42 176.0 88 93.2
A09p37760 Brassica napus HOM05D012303 ORTHO05D014119 9.7e-42 173.3 88 92.0
A09p37750 Brassica napus HOM05D012303 ORTHO05D014119 4.1e-40 167.9 88 89.8
C09p30450 Brassica napus HOM05D012303 ORTHO05D014119 7.2e-37 157.1 88 86.4
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 2.0e-31 139.0 88 76.1
BraA09t40423Z Brassica rapa HOM05D012303 ORTHO05D014119 5.5e-29 131.0 66 92.4
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 4.0e-19 98.2 65 73.8
C09p72070 Brassica napus HOM05D003015 ORTHO05D003733 8.8e-19 97.1 67 70.1
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 2.2e-17 92.4 65 70.8
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 9.1e-16 87.0 77 62.3
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 1.6e-15 86.3 79 62.0
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 7.2e-13 77.4 106 48.1
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 9.5e-13 77.0 109 47.7
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.6e-12 75.1 109 45.0
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 4.4e-10 68.2 107 45.8
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 5.4e-08 61.2 92 41.3
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 7.0e-08 60.8 98 37.8
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 9.2e-08 60.5 108 39.8
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 1.6e-07 59.7 99 42.4
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.6e-07 59.7 92 40.2
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.6e-07 59.7 105 41.9
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.0e-07 59.3 92 39.1
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 2.7e-07 58.9 78 48.7
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 2.7e-07 58.9 90 42.2
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 4.5e-07 58.2 99 38.4
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 4.5e-07 58.2 78 48.7
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 1.3e-06 56.6 95 41.1
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 1.3e-06 56.6 100 43.0
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 1.7e-06 56.2 80 50.0
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 1.7e-06 56.2 97 40.2
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 1.7e-06 56.2 89 43.8
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 2.3e-06 55.8 91 37.4
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 2.3e-06 55.8 91 37.4
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 2.3e-06 55.8 89 39.3
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 2.3e-06 55.8 89 39.3
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 2.3e-06 55.8 92 39.1
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 6.6e-06 54.3 97 42.3
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 8.6e-06 53.9 96 40.6
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 8.6e-06 53.9 96 39.6
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 8.6e-06 53.9 100 43.0


User provided reference genes

Program Settings