Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-240 835.5 426 100.0
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 5.0e-238 827.4 426 99.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 5.0e-238 827.4 426 99.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-227 793.1 426 96.2
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-227 792.3 426 95.8
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.8e-227 792.3 426 95.8
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 8.9e-227 790.0 426 95.5
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.5e-226 789.3 426 96.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.7e-222 775.8 426 93.7
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.3e-222 775.4 426 93.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-221 772.7 426 93.2
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 7.3e-221 770.4 426 93.2
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 9.5e-221 770.0 426 93.0
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 4.4e-218 761.1 426 91.5
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.5e-213 746.1 426 90.4
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.9e-208 729.2 426 86.9
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.2e-208 728.4 426 87.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-207 726.1 428 89.0
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 6.6e-198 694.1 426 83.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.6e-196 689.5 426 82.6
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.8e-195 686.0 426 82.9
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.0e-194 682.6 421 82.7
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.7e-193 679.5 426 81.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.7e-193 679.5 426 80.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 4.6e-191 671.4 426 80.3
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-190 669.1 426 79.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.0e-190 668.7 426 78.9
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.9e-190 668.3 426 80.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.9e-190 668.3 426 80.5
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-190 667.9 430 82.8
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.6e-190 667.5 426 78.6
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 8.7e-190 667.2 426 79.1
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.5e-189 666.4 428 80.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.5e-189 666.4 426 79.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-189 666.4 426 78.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 3.3e-189 665.2 426 79.3
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 5.6e-189 664.5 422 80.1
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 9.6e-189 663.7 426 79.1
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 8.1e-188 660.6 425 79.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.1e-187 660.2 426 78.9
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.1e-187 660.2 426 78.6
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.0e-187 658.3 423 79.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.0e-187 658.3 426 77.9
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 7.6e-186 654.1 425 77.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.4e-185 651.0 425 78.1
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.1e-184 650.2 426 78.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.4e-184 649.8 421 77.4
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.9e-184 649.4 426 78.4
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.4e-184 649.0 426 77.9
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.2e-184 648.7 426 77.9
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 4.2e-184 648.3 425 77.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 9.3e-184 647.1 423 78.0
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 9.3e-184 647.1 426 77.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.1e-183 646.0 426 77.5
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.7e-183 645.6 426 77.0
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.6e-183 644.8 457 73.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 6.0e-183 644.4 423 77.3
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 7.9e-183 644.0 421 78.9
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 7.9e-183 644.0 425 77.2
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 3.9e-182 641.7 423 77.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 5.1e-182 641.3 423 77.1
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.1e-181 640.2 425 76.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 5.6e-181 637.9 425 77.4
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 7.4e-181 637.5 426 76.1
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 7.4e-181 637.5 427 76.8
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 4.8e-180 634.8 426 76.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.2e-180 634.4 426 75.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 6.2e-180 634.4 425 76.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.8e-179 632.9 426 75.8
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.8e-179 632.9 426 75.8
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.2e-178 630.2 425 75.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.0e-178 629.4 425 74.8
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.4e-178 628.6 425 77.2
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 4.5e-178 628.2 422 75.4
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.9e-178 627.1 425 74.6
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.9e-177 624.8 426 74.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 6.4e-177 624.4 426 74.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 8.4e-177 624.0 428 75.2
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.2e-175 620.2 424 74.8
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 6.0e-175 617.8 432 74.1
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.0e-174 617.1 432 73.6
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.9e-174 615.1 427 75.4
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 6.7e-174 614.4 387 81.1
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 8.7e-174 614.0 383 82.0
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.9e-173 612.8 442 71.9
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 9.6e-173 610.5 451 71.0
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.2e-172 607.8 422 74.6
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.9e-169 598.2 427 71.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 6.5e-169 597.8 427 72.1
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 5.1e-166 588.2 426 72.1
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.3e-165 585.1 425 67.5
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-163 580.5 317 94.0
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.9e-163 577.8 427 70.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.2e-160 568.9 418 71.3
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 4.2e-160 568.5 422 71.6
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 4.3e-157 558.5 426 68.8
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 5.9e-154 548.1 423 69.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 5.9e-154 548.1 383 74.4
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 5.1e-150 535.0 422 64.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.5e-149 533.5 422 64.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.5e-146 523.5 497 60.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 5.9e-146 521.5 325 81.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.5e-144 516.2 424 65.8
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-137 493.4 325 80.9
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.7e-137 493.4 410 62.0
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 4.7e-135 485.3 424 58.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 6.1e-135 485.0 417 56.8
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-132 476.5 294 82.0
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-131 474.2 294 81.6
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.3e-129 467.2 308 76.3
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-122 443.0 296 79.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 6.1e-119 431.8 268 81.7
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-113 412.9 304 76.3
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.5e-109 400.6 268 73.9
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.0e-105 387.9 326 63.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-104 382.9 297 67.7
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.1e-96 357.8 355 51.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-89 334.0 238 72.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 8.4e-84 315.1 191 81.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-80 302.8 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.2e-75 286.2 217 69.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.5e-72 277.7 196 72.4
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.9e-69 265.0 215 66.5
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 9.9e-69 265.0 173 75.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 7.6e-61 238.8 409 35.9
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-60 237.7 210 67.1
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.6e-58 229.6 126 88.9
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.7e-57 225.7 161 77.6
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.5e-56 224.6 412 33.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.3e-55 221.5 139 80.6
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.9e-54 215.7 163 74.8
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 6.9e-54 215.7 232 50.9
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 2.6e-53 213.8 333 34.5
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.6e-47 194.5 114 86.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.9e-44 183.7 133 69.2
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-38 164.5 114 72.8
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.5e-32 144.8 426 29.3
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-31 140.6 95 73.7
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.3e-31 139.4 80 82.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.2e-27 127.1 107 57.9
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.1e-26 124.4 115 60.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.0e-25 120.6 127 62.2
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.1e-24 118.6 143 54.5
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.8e-23 113.2 146 53.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.5e-19 99.8 99 57.6
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-18 97.8 72 76.4
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.6e-16 90.9 51 84.3
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.7e-15 87.0 165 35.2
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.3e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 5.0e-12 76.6 54 75.9
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-07 61.6 66 51.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 4.1e-06 57.0 74 47.3


User provided reference genes

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