Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 4.4e-172 607.8 303 100.0
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 3.3e-167 591.7 303 98.3
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 2.8e-166 588.6 303 98.0
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 5.3e-165 584.3 303 97.0
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 4.5e-164 581.3 303 96.4
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 2.7e-161 572.0 303 95.4
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 8.1e-158 560.5 303 93.1
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 5.1e-152 541.2 304 89.8
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 6.7e-152 540.8 303 89.1
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 3.7e-150 535.0 306 88.6
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 2.2e-147 525.8 304 86.8
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.4e-146 523.1 303 86.5
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 2.5e-146 522.3 304 85.9
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.8e-144 516.2 297 87.9
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.8e-144 516.2 300 87.3
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 6.7e-144 514.2 297 87.9
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.9e-143 512.7 303 84.8
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 9.6e-143 510.4 304 84.2
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.5e-140 503.1 303 83.5
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 1.3e-136 490.0 302 80.5
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 3.8e-131 471.9 303 78.9
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 5.7e-127 458.0 303 74.6
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.3e-126 456.8 303 75.2
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 4.1e-125 451.8 303 75.2
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 9.1e-125 450.7 303 73.9
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 4.5e-124 448.4 304 74.0
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 3.8e-123 445.3 306 73.9
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 7.2e-122 441.0 302 72.2
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 9.4e-122 440.7 303 72.6
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.6e-121 439.9 304 71.7
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.8e-120 436.4 303 72.6
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 2.0e-119 433.0 295 73.2
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 5.7e-119 431.4 303 71.9
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 6.3e-118 427.9 305 70.8
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 8.2e-118 427.6 303 70.6
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 1.1e-117 427.2 304 71.7
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 7.0e-117 424.5 299 70.2
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 7.0e-117 424.5 303 70.0
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 1.3e-115 420.2 316 69.0
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 2.9e-115 419.1 305 69.5
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 3.8e-115 418.7 306 69.6
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 5.0e-115 418.3 305 68.9
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.1e-114 417.2 295 70.5
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 5.5e-114 414.8 306 69.9
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.1e-113 412.9 306 69.9
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.0e-112 410.6 301 68.4
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 2.3e-112 409.5 305 69.8
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 3.0e-112 409.1 278 72.7
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 8.8e-112 407.5 338 63.0
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 1.5e-111 406.8 298 67.8
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 4.4e-111 405.2 263 77.2
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 4.4e-111 405.2 302 69.5
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 5.7e-111 404.8 308 68.2
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 7.5e-111 404.4 300 68.3
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.5e-111 404.4 306 68.0
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 9.7e-111 404.1 307 69.4
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 3.7e-110 402.1 302 68.5
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 3.7e-110 402.1 315 65.7
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.1e-109 400.6 306 67.0
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 2.4e-109 399.4 299 66.9
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 3.1e-109 399.1 304 66.1
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 7.0e-109 397.9 299 66.6
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.7e-108 396.0 302 66.2
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 3.5e-108 395.6 299 66.2
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 4.5e-108 395.2 321 64.2
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 4.5e-108 395.2 300 66.0
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 5.9e-108 394.8 300 66.0
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 1.0e-107 394.0 305 67.9
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 1.3e-107 393.7 299 65.2
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 2.9e-107 392.5 294 66.0
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.8e-107 392.1 321 63.6
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 5.0e-107 391.7 292 68.2
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.1e-106 390.6 324 63.6
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.5e-106 389.4 271 70.8
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.2e-106 388.7 284 69.7
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 5.5e-106 388.3 292 67.8
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 9.4e-106 387.5 289 66.8
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 1.6e-105 386.7 294 67.0
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 4.7e-105 385.2 303 66.3
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.3e-102 377.1 288 68.1
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.8e-101 373.2 301 64.5
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.7e-99 366.7 292 62.7
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 2.5e-98 362.8 295 62.7
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 7.2e-98 361.3 223 83.4
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.2e-97 360.5 280 65.0
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 6.8e-96 354.8 330 60.3
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 8.8e-96 354.4 246 72.8
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 4.1e-93 345.5 299 59.5
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 7.8e-92 341.3 216 75.9
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.6e-91 338.2 251 68.5
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.0e-88 330.9 249 69.5
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 2.3e-88 329.7 255 67.1
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 2.3e-88 329.7 246 70.3
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 4.0e-88 328.9 249 68.3
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 3.2e-85 319.3 215 72.6
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 3.2e-85 319.3 310 54.2
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 3.3e-82 309.3 301 53.2
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.3e-82 309.3 248 65.3
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 3.7e-78 295.8 276 58.3
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 1.5e-74 283.9 221 67.9
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.4e-71 272.7 251 58.6
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 2.7e-68 263.1 219 64.4
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 6.0e-68 261.9 292 52.4
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.9e-66 256.9 243 59.3
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.3e-66 255.0 439 40.1
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 2.1e-65 253.4 149 77.2
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 6.2e-65 251.9 315 44.8
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 7.1e-61 238.4 255 52.5
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 5.1e-59 232.3 225 57.3
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 1.6e-57 227.3 183 67.2
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.4e-56 224.2 186 60.8
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.2e-53 213.0 237 53.6
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.7e-51 207.2 212 56.6
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 9.6e-50 201.4 180 61.1
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 9.9e-47 191.4 125 72.0
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 1.7e-46 190.7 111 74.8
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 8.4e-46 188.3 135 67.4
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 1.4e-45 187.6 166 60.8
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 1.5e-39 167.5 95 82.1
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 2.2e-38 163.7 290 37.2
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.7e-36 156.8 96 74.0
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 1.4e-32 144.4 86 76.7
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 3.2e-29 133.3 140 57.9
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 7.9e-28 128.6 346 30.3
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.1e-26 124.8 249 34.5
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.1e-26 124.8 157 47.1
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 1.9e-26 124.0 70 81.4
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 4.1e-24 116.3 164 43.9
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 9.0e-24 115.2 133 42.1
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 6.3e-17 92.4 110 51.8
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.0e-14 85.1 97 53.6
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 5.1e-11 72.8 31 93.5
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.5e-10 71.2 93 50.5
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 6.3e-09 65.9 90 50.0
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.1e-08 63.2 57 54.4


User provided reference genes

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