Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24809 Brassica carinata HOM05D023048 ORTHO05D024144 7.1e-104 380.6 186 100.0
C05p08270 Brassica napus HOM05D023048 ORTHO05D024144 5.4e-88 327.8 186 89.8
BolC3t12720H Brassica oleracea HOM05D023048 ORTHO05D024144 2.7e-87 325.5 186 89.2
C09p59210 Brassica napus HOM05D023048 ORTHO05D024144 2.3e-86 322.4 186 88.7
BraA01t02391Z Brassica rapa HOM05D023048 ORTHO05D024144 5.2e-22 108.6 56 96.4
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 3.1e-14 82.8 37 94.6
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 3.1e-14 82.8 37 94.6
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 3.1e-14 82.8 37 94.6
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 6.8e-14 81.6 37 91.9
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 5.8e-13 78.6 37 91.9
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 5.8e-13 78.6 37 91.9
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 3.2e-11 72.8 43 76.7
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 1.6e-10 70.5 43 72.1
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 3.5e-10 69.3 43 72.1
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 4.6e-10 68.9 41 73.2
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 4.6e-10 68.9 43 67.4
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 1.0e-09 67.8 43 69.8
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 6.6e-09 65.1 43 67.4
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 1.5e-08 63.9 40 57.5
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 1.9e-08 63.5 43 65.1
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 5.6e-08 62.0 43 60.5
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 1.2e-07 60.8 43 55.8
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 1.6e-07 60.5 46 56.5
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 2.1e-07 60.1 43 55.8
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 2.1e-07 60.1 43 55.8
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 2.8e-07 59.7 90 33.3
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 2.8e-07 59.7 43 53.5
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 3.6e-07 59.3 46 50.0
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 3.6e-07 59.3 46 54.3
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 3.6e-07 59.3 46 50.0
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 3.6e-07 59.3 46 52.2
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 4.7e-07 58.9 46 52.2
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 6.2e-07 58.5 46 50.0
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 6.2e-07 58.5 44 54.5
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 6.2e-07 58.5 46 50.0
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 6.2e-07 58.5 44 54.5
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 8.0e-07 58.2 46 54.3
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 8.0e-07 58.2 44 52.3
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 8.0e-07 58.2 46 47.8
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 1.4e-06 57.4 43 55.8
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 1.4e-06 57.4 43 48.8
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 1.4e-06 57.4 46 45.7
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 1.8e-06 57.0 46 47.8
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 1.8e-06 57.0 46 50.0
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 1.8e-06 57.0 43 55.8
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 2.3e-06 56.6 44 52.3
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 2.3e-06 56.6 43 51.2
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 2.3e-06 56.6 46 52.2
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 3.1e-06 56.2 43 51.2
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 3.1e-06 56.2 43 51.2
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 3.1e-06 56.2 43 51.2
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 3.1e-06 56.2 48 47.9
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 3.1e-06 56.2 46 47.8
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 3.1e-06 56.2 46 52.2
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 3.1e-06 56.2 44 54.5
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 4.0e-06 55.8 43 48.8
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 5.2e-06 55.5 43 48.8
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 5.2e-06 55.5 43 48.8
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 5.2e-06 55.5 46 47.8
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 5.2e-06 55.5 46 47.8
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 5.2e-06 55.5 46 47.8
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 5.2e-06 55.5 45 48.9
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 5.2e-06 55.5 43 53.5
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 5.2e-06 55.5 43 51.2
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 6.8e-06 55.1 43 53.5
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 6.8e-06 55.1 48 47.9
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 6.8e-06 55.1 48 47.9
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 6.8e-06 55.1 48 47.9
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 6.8e-06 55.1 48 47.9
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 6.8e-06 55.1 48 47.9
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 8.9e-06 54.7 44 52.3


User provided reference genes

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