Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23748 Brassica carinata HOM05D002263 ORTHO05D094980 2.2e-41 171.8 82 100.0
BcaC04g23749 Brassica carinata HOM05D002263 ORTHO05D091025 2.2e-41 171.8 82 100.0
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 5.1e-22 107.5 87 63.2
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 5.1e-22 107.5 87 63.2
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 8.7e-22 106.7 87 62.1
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 1.9e-16 89.0 87 50.6
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 5.5e-16 87.4 93 49.5
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 9.3e-16 86.7 93 48.4
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 1.2e-15 86.3 93 48.4
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.2e-15 86.3 90 48.9
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.6e-15 85.9 93 48.4
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.7e-15 85.1 89 49.4
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 2.7e-15 85.1 93 49.5
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 2.7e-15 85.1 90 44.4
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 2.7e-15 85.1 90 44.4
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 2.7e-15 85.1 90 48.9
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 2.7e-15 85.1 93 50.5
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 3.5e-15 84.7 82 50.0
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 3.5e-15 84.7 82 50.0
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 3.5e-15 84.7 82 50.0
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 3.5e-15 84.7 82 50.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 3.5e-15 84.7 82 50.0
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 3.5e-15 84.7 82 50.0
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.5e-15 84.7 93 48.4
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 3.5e-15 84.7 93 49.5
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 4.6e-15 84.3 93 49.5
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 4.6e-15 84.3 93 49.5
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 4.6e-15 84.3 93 49.5
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.6e-15 84.3 93 49.5
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.6e-15 84.3 93 49.5
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 4.6e-15 84.3 82 50.0
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 49.5
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 46.2
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 48.4
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 49.5
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 48.4
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 48.4
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 48.4
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 46.2
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 46.2
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 46.2
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 6.0e-15 84.0 93 46.2
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 7.9e-15 83.6 93 46.2
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 7.9e-15 83.6 87 48.3
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 7.9e-15 83.6 87 48.3
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 7.9e-15 83.6 87 48.3
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 7.9e-15 83.6 90 47.8
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 7.9e-15 83.6 90 47.8
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 7.9e-15 83.6 90 47.8
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 7.9e-15 83.6 93 49.5
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 7.9e-15 83.6 87 48.3
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 7.9e-15 83.6 93 49.5
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 7.9e-15 83.6 93 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.0e-14 83.2 93 48.4
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.0e-14 83.2 93 49.5
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.0e-14 83.2 90 44.4
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.0e-14 83.2 93 47.3
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.0e-14 83.2 93 47.3
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.0e-14 83.2 93 47.3
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.0e-14 83.2 93 49.5
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 1.3e-14 82.8 93 46.2
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.3e-14 82.8 93 46.2
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.3e-14 82.8 90 46.7
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.3e-14 82.8 93 47.3
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 1.3e-14 82.8 90 43.3
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.3e-14 82.8 93 47.3
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.3e-14 82.8 93 46.2
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.3e-14 82.8 93 46.2
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.8e-14 82.4 90 46.7
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 48.4
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 48.4
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 47.3
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 47.3
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 47.3
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 47.3
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 47.3
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.8e-14 82.4 87 48.3
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.8e-14 82.4 93 47.3
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 47.3
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 47.3
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 45.2
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 46.2
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 45.2
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 45.2
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 45.2
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 46.2
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 46.2
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.3e-14 82.0 93 48.4
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 2.3e-14 82.0 90 46.7
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 2.3e-14 82.0 90 46.7
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 3.0e-14 81.6 79 49.4
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 3.0e-14 81.6 93 46.2
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 3.0e-14 81.6 93 46.2
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 3.0e-14 81.6 90 47.8
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 3.0e-14 81.6 93 45.2
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.0e-14 81.6 93 47.3
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 46.2
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 46.2
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 45.2
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 45.2
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 45.2
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 45.2
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.9e-14 81.3 93 45.2
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 3.9e-14 81.3 82 48.8
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 5.1e-14 80.9 82 48.8
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 6.7e-14 80.5 93 48.4
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.7e-14 80.1 96 45.8
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 8.7e-14 80.1 90 46.7
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.1e-13 79.7 96 45.8
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.1e-13 79.7 82 46.3
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.1e-13 79.7 93 46.2
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 1.1e-13 79.7 90 46.7
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.1e-13 79.7 90 47.8
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.1e-13 79.7 93 46.2
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.1e-13 79.7 93 46.2
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 1.1e-13 79.7 96 43.8
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.5e-13 79.3 93 43.0
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.5e-13 79.3 93 43.0
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.5e-13 79.3 92 46.7
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.5e-13 79.3 82 47.6
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.9e-13 79.0 90 46.7
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.9e-13 79.0 90 46.7
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.5e-13 78.6 83 48.2
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.5e-13 78.6 82 46.3
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 2.5e-13 78.6 82 50.0
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 3.3e-13 78.2 93 44.1
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 3.3e-13 78.2 93 44.1
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 3.3e-13 78.2 82 46.3
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 3.3e-13 78.2 82 46.3
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 4.3e-13 77.8 96 42.7
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 4.3e-13 77.8 96 44.8
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 5.7e-13 77.4 82 46.3
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 5.7e-13 77.4 82 46.3
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 5.7e-13 77.4 93 44.1
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 7.4e-13 77.0 89 46.1
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 1.3e-12 76.3 84 45.2
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.6e-12 75.9 93 45.2
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 1.6e-12 75.9 93 44.1
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.1e-12 75.5 96 42.7
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 3.7e-12 74.7 78 52.6
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 3.7e-12 74.7 87 48.3
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.5e-10 69.3 76 48.7
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 2.6e-10 68.6 82 50.0
BcaC05g29614 Brassica carinata HOM05D002263 ORTHO05D027778 4.5e-10 67.8 90 38.9
C05p59090 Brassica napus HOM05D002263 ORTHO05D027778 4.5e-10 67.8 90 38.9
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 7.6e-10 67.0 90 38.9
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 5.0e-09 64.3 91 35.2
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 1.4e-08 62.8 81 39.5
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 7.1e-08 60.5 80 41.2
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 1.2e-07 59.7 81 39.5
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 2.1e-07 58.9 88 36.4
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 6.1e-07 57.4 81 39.5
Lsat_1_v5_gn_5_88760 Lactuca sativa HOM05D002263 ORTHO05D027778 7.9e-07 57.0 71 39.4
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 1.8e-06 55.8 80 36.2
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 3.0e-06 55.1 80 36.2
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 3.0e-06 55.1 80 35.0
RcHm_v2.0_Chr1g0380661 Rosa chinensis HOM05D002263 ORTHO05D003537 3.0e-06 55.1 82 41.5
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 3.9e-06 54.7 80 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 3.9e-06 54.7 80 38.8
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 3.9e-06 54.7 80 36.2
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 3.9e-06 54.7 80 37.5
Sabra06G0026500 Salix brachista HOM05D003944 ORTHO05D005521 3.9e-06 54.7 80 35.0
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 5.1e-06 54.3 86 33.7
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 5.1e-06 54.3 80 35.0
SHI24526 Sapria himalayana HOM05D003944 ORTHO05D005521 5.1e-06 54.3 80 36.2
SEGI_36072 Sequoiadendron giganteum HOM05D003944 ORTHO05D005521 5.1e-06 54.3 71 40.8
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 6.7e-06 53.9 80 36.2
Cpa.g.sc5.163 Carica papaya HOM05D003944 ORTHO05D005521 6.7e-06 53.9 80 36.2
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 6.7e-06 53.9 80 36.2
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 6.7e-06 53.9 80 36.2
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 6.7e-06 53.9 80 36.2
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 8.7e-06 53.5 80 36.2
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 8.7e-06 53.5 80 36.2
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 8.7e-06 53.5 80 35.0
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 8.7e-06 53.5 80 36.2
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 8.7e-06 53.5 79 38.0


User provided reference genes

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