Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 6.6e-70 267.3 140 100.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-67 260.0 138 97.8
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.0e-67 260.0 138 97.8
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-63 245.7 144 91.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.7e-62 242.7 143 91.6
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 5.8e-58 227.6 141 87.2
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.6e-44 183.0 140 68.6
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 4.0e-43 178.3 142 71.1
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 4.0e-43 178.3 142 71.1
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 8.9e-43 177.2 142 70.4
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.6e-42 175.6 140 70.0
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-42 175.6 140 70.0
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.9e-41 171.4 141 66.7
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 6.4e-41 171.0 145 66.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.9e-40 169.5 138 65.2
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.4e-40 169.1 140 65.0
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.4e-40 167.9 138 64.5
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 9.3e-40 167.2 140 65.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 3.5e-39 165.2 142 64.1
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.5e-39 165.2 143 65.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 6.0e-39 164.5 140 63.6
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 7.8e-39 164.1 141 65.2
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 7.8e-39 164.1 141 65.2
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 7.8e-39 164.1 141 65.2
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 6.6e-38 161.0 142 64.1
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 6.6e-38 161.0 142 64.1
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 6.6e-38 161.0 142 64.1
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 5.6e-37 157.9 139 63.3
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 7.6e-34 147.5 137 59.9
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 5.4e-32 141.4 135 60.0
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.0e-30 135.6 132 55.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 6.7e-30 134.4 135 54.1
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.5e-29 133.3 134 53.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 4.3e-29 131.7 129 54.3
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 5.6e-29 131.3 125 60.0
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.4e-29 131.0 134 51.5
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 7.4e-29 131.0 128 54.7
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 9.6e-29 130.6 142 52.1
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-28 130.2 128 53.9
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.6e-28 129.8 128 54.7
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.6e-28 129.8 139 51.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.6e-28 129.8 139 51.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 4.8e-28 128.3 141 51.8
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.1e-27 127.1 139 50.4
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.8e-27 126.3 135 51.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 2.4e-27 125.9 135 52.6
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.4e-27 125.9 119 56.3
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 4.0e-27 125.2 138 50.0
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.3e-27 124.8 141 51.1
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.9e-27 124.4 134 50.7
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 9.0e-27 124.0 135 50.4
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 9.0e-27 124.0 135 50.4
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.0e-27 124.0 144 52.1
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 9.0e-27 124.0 122 56.6
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.5e-26 123.2 137 52.6
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.6e-26 122.5 138 50.7
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.4e-26 122.1 118 56.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 3.4e-26 122.1 137 48.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.4e-26 122.1 139 48.9
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 9.9e-26 120.6 141 51.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.7e-25 119.8 89 64.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.2e-25 119.4 140 47.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 2.9e-25 119.0 120 51.7
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.8e-25 118.6 140 49.3
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.4e-25 117.5 133 49.6
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-24 117.1 123 49.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.4e-24 116.7 142 49.3
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.4e-24 116.7 140 49.3
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.9e-24 116.3 139 47.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.2e-24 115.5 138 47.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 4.2e-24 115.2 135 47.4
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.5e-24 114.8 141 48.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 7.1e-24 114.4 119 52.9
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 9.3e-24 114.0 130 47.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 9.3e-24 114.0 146 46.6
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.1e-23 112.8 144 48.6
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.7e-23 112.5 136 48.5
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-23 112.5 87 63.2
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.7e-23 112.5 153 39.9
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 3.5e-23 112.1 153 42.5
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.6e-23 111.7 135 45.9
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 6.0e-23 111.3 138 45.7
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 6.0e-23 111.3 123 48.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 7.9e-23 110.9 139 47.5
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.0e-22 110.5 138 47.1
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.3e-22 110.2 139 44.6
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.9e-22 108.6 139 46.0
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 5.1e-22 108.2 139 46.0
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 5.1e-22 108.2 139 46.8
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.5e-21 106.7 88 58.0
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.5e-21 106.7 119 47.9
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.5e-21 106.7 138 43.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.5e-21 106.7 138 41.3
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.9e-21 106.3 132 45.5
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.9e-21 106.3 120 47.5
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 4.3e-21 105.1 136 45.6
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.6e-21 104.8 137 45.3
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.4e-21 104.4 87 58.6
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 7.4e-21 104.4 145 42.1
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 7.4e-21 104.4 134 44.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 9.6e-21 104.0 91 57.1
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 9.6e-21 104.0 92 55.4
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-20 103.6 121 47.9
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.1e-20 102.8 138 46.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.1e-20 102.8 119 47.9
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.1e-20 102.8 145 44.8
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.8e-20 102.4 148 43.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 8.1e-20 100.9 121 44.6
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.1e-19 100.5 132 43.9
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.1e-19 100.5 132 43.9
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.4e-19 100.1 80 61.2
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.4e-19 100.1 135 42.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.4e-19 100.1 148 42.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 4.0e-19 98.6 157 42.7
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.9e-19 97.8 141 46.1
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 9.0e-19 97.4 139 43.9
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-18 96.7 75 61.3
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.4e-18 95.5 149 39.6
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.5e-18 95.1 88 50.0
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.5e-18 95.1 134 36.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 7.6e-18 94.4 130 38.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.0e-17 94.0 134 36.6
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.3e-17 93.6 135 40.7
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.2e-17 92.8 86 52.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 3.8e-17 92.0 134 41.8
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 8.4e-17 90.9 159 38.4
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.1e-16 90.5 88 48.9
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.9e-16 89.7 63 69.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.9e-16 89.7 143 36.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.5e-16 89.4 98 42.9
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 4.2e-16 88.6 134 39.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.2e-16 88.6 139 36.7
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 7.1e-16 87.8 120 39.2
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-15 87.0 135 39.3
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.1e-15 86.3 120 41.7
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.9e-15 84.3 93 47.3
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.1e-13 80.5 139 38.1
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.5e-13 80.1 153 36.6
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 3.3e-13 79.0 118 42.4
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 5.7e-13 78.2 105 41.0
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-12 76.6 65 53.8
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 2.4e-11 72.8 140 37.9
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 4.1e-11 72.0 146 32.2
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.0e-10 69.7 96 41.7
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.2e-09 66.2 98 38.8
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.8e-09 65.5 52 59.6
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.9e-08 63.2 90 38.9
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.1e-07 59.7 77 41.6
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.6e-07 58.5 135 31.9
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 4.6e-07 58.5 71 43.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 7.9e-07 57.8 102 41.2
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 5.1e-06 55.1 42 61.9


User provided reference genes

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