Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 7.3e-130 467.2 235 100.0
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 7.5e-127 457.2 235 98.3
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 3.5e-124 448.4 227 99.1
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 5.0e-123 444.5 235 96.6
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 2.1e-121 439.1 236 96.2
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 4.6e-116 421.4 238 92.9
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.0e-115 420.2 236 93.2
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 4.3e-114 414.8 236 91.9
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.8e-112 409.5 236 91.9
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.8e-112 409.5 236 91.9
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 3.1e-112 408.7 240 90.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 3.1e-112 408.7 235 91.9
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.6e-108 396.4 238 86.1
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 7.6e-103 377.5 237 83.1
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.4e-101 373.2 238 83.6
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 3.2e-101 372.1 234 83.8
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 9.3e-101 370.5 238 82.8
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.1e-100 369.4 235 82.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.4e-96 355.9 235 79.6
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.5e-95 353.2 240 78.8
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 3.1e-88 328.9 194 85.1
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 6.9e-88 327.8 231 74.0
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.2e-87 327.0 241 73.4
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.5e-87 326.6 251 70.5
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.4e-87 325.5 239 73.6
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 4.5e-87 325.1 216 76.4
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 4.5e-87 325.1 242 72.3
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 5.8e-87 324.7 235 73.6
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-86 323.6 219 75.8
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.3e-86 323.6 219 75.8
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 236 71.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.9e-86 322.4 241 71.8
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 4.9e-86 321.6 238 71.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 8.4e-86 320.9 235 74.0
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 180 86.7
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.9e-85 319.7 241 71.0
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.9e-85 319.7 238 72.3
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 3.2e-85 318.9 238 72.3
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.2e-85 318.9 185 85.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.2e-85 318.9 181 85.6
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 4.2e-85 318.5 190 82.1
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 4.2e-85 318.5 182 86.8
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.5e-85 318.2 224 72.3
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.5e-85 318.2 197 80.7
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 5.5e-85 318.2 222 73.0
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 7.1e-85 317.8 242 69.4
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 7.1e-85 317.8 238 70.2
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 9.3e-85 317.4 250 69.6
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 9.3e-85 317.4 239 72.4
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 9.3e-85 317.4 246 70.7
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 9.3e-85 317.4 235 72.8
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 9.3e-85 317.4 227 73.1
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.2e-84 317.0 197 80.2
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.2e-84 317.0 235 70.2
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.6e-84 316.6 198 80.8
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.6e-84 316.6 191 82.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.1e-84 316.2 226 71.7
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.1e-84 316.2 227 72.7
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.7e-84 315.8 179 85.5
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.7e-84 315.8 193 80.8
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 4.6e-84 315.1 182 84.1
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 4.6e-84 315.1 226 72.6
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 4.6e-84 315.1 243 69.5
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 4.6e-84 315.1 183 85.2
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 7.9e-84 314.3 198 79.3
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 7.9e-84 314.3 242 68.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 1.0e-83 313.9 208 77.9
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.0e-83 313.9 212 75.9
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.0e-83 313.9 183 84.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.3e-83 313.5 235 69.8
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.3e-83 313.5 162 92.6
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.3e-83 312.8 234 69.2
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 2.3e-83 312.8 192 81.8
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.0e-83 312.4 221 72.4
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 3.0e-83 312.4 184 82.1
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 5.1e-83 311.6 160 93.8
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.1e-83 311.6 237 69.6
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 5.1e-83 311.6 223 74.0
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.1e-83 311.6 182 83.5
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.7e-83 310.8 198 77.3
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 8.7e-83 310.8 191 81.2
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.1e-82 310.5 191 81.7
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.5e-82 310.1 235 69.4
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.9e-82 309.7 187 82.4
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 2.5e-82 309.3 241 68.9
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.5e-82 309.3 237 69.6
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 5.6e-82 308.1 239 68.2
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 4.8e-81 305.1 182 79.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 4.8e-81 305.1 201 76.6
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 8.1e-81 304.3 200 76.5
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.1e-80 303.9 234 69.2
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-80 303.5 198 78.8
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.8e-80 303.1 175 82.3
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 3.1e-80 302.4 234 70.5
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 6.9e-80 301.2 169 83.4
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 9.0e-80 300.8 221 71.0
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.5e-79 300.1 159 89.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 4.5e-79 298.5 156 90.4
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 7.6e-79 297.7 237 65.8
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.0e-78 297.4 186 79.0
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 8.4e-78 294.3 197 73.6
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 8.4e-78 294.3 191 75.4
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.1e-77 293.9 258 62.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.9e-77 293.1 200 73.0
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 3.2e-77 292.4 207 72.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.3e-75 287.0 204 71.1
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 8.7e-75 284.3 226 67.3
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 2.4e-72 276.2 235 63.4
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 3.1e-72 275.8 140 92.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 4.1e-72 275.4 180 72.8
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.0e-70 270.8 192 67.7
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 8.4e-70 267.7 275 57.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 4.6e-68 261.9 187 64.2
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 7.9e-68 261.2 234 62.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 5.7e-66 255.0 136 88.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.4e-66 254.6 225 63.1
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.2e-63 247.3 180 68.9
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 5.9e-63 245.0 182 65.4
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.0e-62 244.2 241 59.8
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.5e-55 220.3 222 59.0
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.0e-54 217.6 122 86.9
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 3.7e-49 199.1 153 67.3
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.2e-45 185.7 149 64.4
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.7e-44 183.0 135 68.9
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 4.0e-43 179.1 104 87.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 5.2e-43 178.7 104 86.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.0e-42 176.8 140 64.3
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 2.2e-41 173.3 112 78.6
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 4.1e-40 169.1 140 62.9
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 5.3e-40 168.7 83 91.6
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.0e-34 150.2 138 63.0
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 7.7e-31 138.3 124 58.9
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.7e-30 137.1 147 42.9
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 5.0e-30 135.6 82 81.7
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.1e-29 134.4 78 85.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.1e-28 130.2 75 85.3
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.8e-27 124.8 87 74.7
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.3e-22 110.2 77 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.5e-18 97.4 79 62.0
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-18 97.4 92 62.0
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.9e-14 82.8 49 81.6
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.8e-10 68.9 47 68.1
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 9.8e-10 68.2 118 43.2
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.9e-06 56.2 32 78.1


User provided reference genes

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