Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 7.5e-197 690.3 335 100.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.8e-191 671.8 335 97.3
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 8.6e-185 650.2 380 85.8
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.5e-184 648.7 336 94.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.2e-181 639.8 337 93.5
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.5e-181 639.4 337 93.5
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 6.0e-178 627.5 342 89.2
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-176 623.2 343 88.9
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.5e-176 622.1 343 88.9
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.5e-176 622.1 343 88.9
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 5.6e-176 620.9 338 90.5
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 8.1e-175 617.1 344 88.4
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.2e-173 613.2 340 88.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 8.4e-172 607.1 338 87.6
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 4.2e-171 604.7 338 87.6
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 4.6e-170 601.3 340 86.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.6e-169 597.4 334 86.8
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.0e-157 559.3 344 79.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 3.3e-152 542.0 346 75.7
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 6.9e-134 481.1 359 64.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.9e-129 465.3 358 62.3
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.2e-127 459.5 355 65.1
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 3.7e-127 458.8 360 61.9
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 3.7e-127 458.8 341 65.1
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 6.3e-127 458.0 357 61.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.8e-126 456.4 365 61.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 3.1e-126 455.7 353 62.3
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 4.1e-126 455.3 361 60.4
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 6.9e-126 454.5 351 62.4
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.6e-125 452.6 360 61.9
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 2.6e-125 452.6 361 61.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.7e-124 449.9 348 60.9
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.7e-124 449.9 345 61.7
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.7e-124 449.9 362 61.9
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.7e-124 449.9 345 60.3
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.9e-124 449.1 341 61.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.9e-124 449.1 360 61.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.8e-124 448.7 331 64.4
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.5e-124 448.0 345 61.2
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.1e-123 447.2 360 60.8
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-123 446.8 361 60.1
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 9.4e-123 444.1 368 59.2
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.2e-122 443.7 343 61.8
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.2e-122 443.7 360 60.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.6e-122 443.4 355 60.6
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.6e-122 443.4 343 60.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 6.1e-122 441.4 362 58.8
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.9e-122 441.0 362 59.1
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.9e-122 441.0 355 60.3
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.0e-121 440.7 363 58.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.4e-121 440.3 356 61.2
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.4e-121 440.3 356 59.3
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 2.3e-121 439.5 361 58.7
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.3e-121 439.5 357 60.8
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 3.0e-121 439.1 341 61.6
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.9e-121 438.7 345 59.7
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.9e-121 438.7 338 60.9
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 8.8e-121 437.6 329 63.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.3e-120 435.6 363 60.6
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.3e-120 435.6 359 59.1
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.3e-119 433.7 374 59.6
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.2e-119 433.0 360 59.4
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 2.2e-119 433.0 345 59.1
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.7e-119 432.2 342 60.8
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 4.8e-119 431.8 352 60.8
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 8.2e-119 431.0 356 58.7
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.4e-118 429.5 333 61.0
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.3e-118 428.3 351 61.0
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 5.3e-118 428.3 365 57.5
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 5.3e-118 428.3 355 58.6
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 7.0e-118 427.9 362 56.9
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.6e-117 426.8 352 58.8
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.0e-117 426.4 364 56.6
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 5.0e-116 421.8 355 57.5
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 5.0e-116 421.8 355 57.5
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.9e-115 419.9 404 52.0
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 7.2e-115 417.9 351 57.5
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 9.4e-115 417.5 350 58.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 2.1e-114 416.4 372 55.4
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.7e-114 415.2 359 56.3
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 2.3e-113 412.9 319 62.1
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 4.0e-113 412.1 356 58.1
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.5e-112 410.2 372 54.8
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 6.3e-111 404.8 433 49.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.4e-110 402.9 341 57.8
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.0e-110 401.4 368 54.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.6e-109 400.2 354 57.3
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.9e-108 396.0 490 45.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 3.8e-108 395.6 360 55.3
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 5.0e-108 395.2 427 49.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.5e-107 392.9 321 60.1
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 4.4e-104 382.1 248 69.0
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.7e-103 379.0 353 53.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-102 377.5 303 59.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.4e-102 377.1 343 53.4
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.8e-102 376.7 363 54.3
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 6.5e-100 368.2 358 49.7
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 8.6e-100 367.9 310 58.4
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 3.2e-99 365.9 365 49.9
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.2e-96 357.5 387 47.8
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.4e-96 355.5 360 52.2
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.3e-95 354.0 357 52.1
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 5.0e-92 342.0 318 55.0
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.9e-91 340.1 349 51.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 1.6e-90 337.0 353 50.7
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.8e-89 333.6 253 63.6
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.8e-86 323.6 419 40.6
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.1e-82 310.1 207 67.6
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.5e-80 303.9 295 54.9
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.4e-80 302.4 209 66.5
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.5e-75 287.3 412 38.3
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.5e-75 286.6 376 40.4
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.3e-75 285.8 156 78.8
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.8e-73 280.4 337 42.1
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 4.0e-73 279.3 286 48.6
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.2e-69 267.7 184 78.3
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.4e-62 243.4 133 79.7
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.5e-61 239.6 345 40.6
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 6.6e-60 235.3 131 76.3
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 5.8e-56 222.2 227 51.1
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.8e-50 203.4 238 44.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.8e-50 203.4 238 44.5
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 7.6e-40 168.7 180 48.3
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.2e-39 167.2 181 47.5
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.4e-38 164.5 276 34.8
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.3e-36 157.9 83 81.9
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.1e-34 150.6 182 45.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 3.0e-28 130.2 76 76.3
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 3.8e-23 113.2 244 32.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.1e-17 95.1 76 55.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.1e-17 92.0 130 40.0
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.9e-16 89.4 89 49.4
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.1e-06 58.5 102 36.3


User provided reference genes

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