Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 4.9e-249 864.0 429 100.0
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 6.2e-228 793.9 429 91.1
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 1.6e-223 779.2 427 89.5
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 1.3e-214 749.6 428 87.6
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 1.5e-210 736.1 434 85.0
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 1.4e-208 729.6 434 83.6
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 2.1e-207 725.7 361 98.3
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 2.7e-207 725.3 434 83.4
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 1.1e-203 713.4 430 82.8
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 4.0e-203 711.4 434 83.4
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 2.2e-193 679.1 433 76.4
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 1.6e-183 646.4 434 71.7
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 1.0e-182 643.7 423 74.5
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 1.1e-181 640.2 433 71.1
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 4.3e-181 638.3 433 70.4
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.3e-181 638.3 429 72.5
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 7.4e-181 637.5 431 69.8
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 1.7e-180 636.3 433 72.3
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 3.7e-180 635.2 437 71.2
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 6.3e-180 634.4 427 72.1
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 1.1e-179 633.6 434 69.4
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 1.1e-179 633.6 427 71.9
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 1.8e-179 632.9 431 69.8
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 5.3e-179 631.3 432 70.6
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 6.9e-179 630.9 429 71.3
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 1.2e-178 630.2 431 68.9
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 2.0e-178 629.4 432 70.4
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 7.7e-178 627.5 436 69.3
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.9e-177 625.5 434 70.3
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 8.5e-177 624.0 434 69.6
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 1.9e-176 622.9 429 69.0
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 2.5e-176 622.5 429 69.2
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 2.5e-176 622.5 434 68.7
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.5e-176 622.5 434 69.8
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 5.5e-176 621.3 434 68.4
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 1.2e-175 620.2 430 69.1
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 1.6e-175 619.8 435 67.6
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 2.7e-175 619.0 429 68.5
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 2.7e-175 619.0 434 69.8
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 4.7e-175 618.2 432 68.1
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 4.7e-175 618.2 433 70.0
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 6.1e-175 617.8 429 68.5
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 6.1e-175 617.8 432 68.1
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 1.4e-174 616.7 427 68.1
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 2.3e-174 615.9 433 68.4
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 3.0e-174 615.5 435 68.0
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 1.1e-173 613.6 430 67.0
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 1.5e-173 613.2 444 67.1
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 7.4e-173 610.9 432 68.1
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 7.4e-173 610.9 428 68.2
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 1.3e-172 610.1 430 68.4
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 1.7e-172 609.8 434 68.7
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 3.7e-172 608.6 431 67.1
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 4.8e-172 608.2 437 67.3
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 6.3e-172 607.8 442 66.5
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 8.2e-172 607.4 428 68.0
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 1.4e-171 606.7 454 65.2
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 4.1e-171 605.1 422 69.0
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 5.3e-171 604.7 432 68.1
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 5.3e-171 604.7 466 64.4
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 9.1e-171 604.0 433 65.8
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 5.9e-170 601.3 436 66.5
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 1.0e-169 600.5 432 66.2
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 1.7e-169 599.7 430 68.4
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 3.2e-168 595.5 432 68.5
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 1.2e-167 593.6 431 67.5
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 1.2e-167 593.6 432 67.1
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 2.7e-167 592.4 432 66.7
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 3.6e-167 592.0 432 68.1
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 4.7e-167 591.7 432 65.7
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 8.8e-166 587.4 434 65.0
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 2.0e-165 586.3 505 58.4
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 6.3e-164 581.3 434 65.2
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 1.4e-163 580.1 431 64.3
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 4.1e-163 578.6 433 65.1
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 3.5e-162 575.5 380 72.9
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 1.3e-161 573.5 409 69.4
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 1.7e-161 573.2 408 66.7
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 3.8e-161 572.0 435 63.0
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 5.2e-158 561.6 435 62.3
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 2.0e-157 559.7 431 62.9
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 4.4e-157 558.5 411 66.2
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 2.2e-156 556.2 434 62.0
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 1.1e-155 553.9 437 63.6
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 1.6e-154 550.1 391 67.5
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 1.6e-154 550.1 435 60.5
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 7.7e-154 547.7 422 63.7
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 1.3e-153 547.0 436 61.5
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 8.5e-153 544.3 437 62.7
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 7.2e-152 541.2 381 67.5
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 8.0e-151 537.7 403 65.0
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 5.2e-150 535.0 451 59.9
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 7.5e-149 531.2 434 60.1
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 4.8e-148 528.5 386 67.6
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 1.7e-145 520.0 432 58.3
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 2.9e-145 519.2 433 58.7
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.8e-138 494.6 433 57.3
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 9.5e-136 487.6 433 56.8
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 1.8e-134 483.4 407 60.4
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 3.1e-134 482.6 474 52.1
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 7.5e-133 478.0 413 55.9
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 2.8e-127 459.5 421 53.9
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 2.3e-126 456.4 513 48.9
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 3.7e-124 449.1 450 52.7
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 5.4e-123 445.3 427 52.9
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 1.3e-121 440.7 429 55.5
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 1.5e-120 437.2 431 53.6
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 1.3e-116 424.1 417 52.0
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 5.4e-115 418.7 347 60.2
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 1.4e-110 404.1 411 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 4.3e-104 382.5 472 43.4
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 6.9e-86 322.0 261 64.4
TPR.G17839 Trifolium pratense HOM05D005508 ORTHO05D006882 1.7e-84 317.4 208 67.8
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 3.1e-78 296.6 413 41.4
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 8.7e-73 278.5 262 55.7
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 9.7e-72 275.0 444 38.7
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 1.6e-71 274.2 218 66.1
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 1.4e-62 244.6 301 47.8
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 2.4e-62 243.8 442 33.0
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 1.7e-60 237.7 259 52.1
TAR622G0687 Trochodendron aralioides HOM05D005508 ORTHO05D006882 2.7e-58 230.3 126 81.0
HPP92_025854 Vanilla planifolia HOM05D005508 ORTHO05D006882 5.7e-56 222.6 122 81.1
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 7.0e-54 215.7 460 32.2
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 1.3e-52 211.5 163 63.8
C09p61540 Brassica napus HOM05D005508 ORTHO05D006882 2.6e-45 187.2 89 96.6
Hund12433 Selenicereus undatus HOM05D005508 ORTHO05D006882 8.5e-36 155.6 91 73.6
BcaC04g18902 Brassica carinata HOM05D000941 ORTHO05D000882 8.0e-34 149.1 84 81.0
BolC9t58917H Brassica oleracea HOM05D005508 ORTHO05D006882 8.0e-34 149.1 84 81.0
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 1.2e-32 145.2 216 45.8
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 7.5e-32 142.5 134 59.7
A02p03100 Brassica napus HOM05D005508 ORTHO05D006882 7.0e-22 109.4 51 100.0
C03p08200 Brassica napus HOM05D005508 ORTHO05D006882 2.7e-21 107.5 51 96.1
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 1.4e-17 95.1 231 32.9
Gohir.A13G117650 Gossypium hirsutum HOM05D005508 ORTHO05D006882 2.4e-14 84.3 53 69.8
Gohir.A10G166950 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.1e-14 83.6 51 72.5
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 2.7e-13 80.9 53 67.9
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.3e-12 77.8 46 73.9
SHI29385 Sapria himalayana HOM05D005508 ORTHO05D006882 6.2e-10 69.7 82 43.9
SHI29386 Sapria himalayana HOM05D005508 ORTHO05D010077 1.1e-09 68.9 61 49.2
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 4.0e-09 67.0 64 59.4
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 5.2e-09 66.6 356 22.8
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 8.9e-09 65.9 39 74.4
Pp3c21_8330 Physcomitrium patens HOM05D017291 ORTHO05D017328 2.0e-08 64.7 323 28.8
CBR_g18966 Chara braunii HOM05D014933 ORTHO05D016523 1.4e-06 58.5 235 25.1
Sed0013649 Sechium edule HOM05D003825 ORTHO05D004491 2.4e-06 57.8 172 29.1
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 5.4e-06 56.6 218 25.2
Sabra09G0088400 Salix brachista HOM05D003825 ORTHO05D004491 5.4e-06 56.6 171 29.8
Carub.0007s0584 Capsella rubella HOM05D003825 ORTHO05D004491 7.1e-06 56.2 172 28.5
CBR_g19035 Chara braunii HOM05D024635 ORTHO05D026692 7.1e-06 56.2 190 24.2


User provided reference genes

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