Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.1e-200 703.0 341 100.0
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.2e-196 688.7 342 97.7
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 6.1e-194 680.6 343 97.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 3.0e-193 678.3 342 97.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 3.0e-193 678.3 342 97.1
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.2e-179 631.7 342 90.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.6e-178 629.4 337 90.5
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 6.1e-178 627.5 342 89.2
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 2.3e-177 625.5 338 88.5
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.0e-176 622.5 343 89.2
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.6e-176 622.1 343 89.2
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 4.4e-176 621.3 342 88.6
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.5e-171 606.3 337 86.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 4.2e-171 604.7 337 86.6
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.1e-170 602.4 338 86.4
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 4.7e-170 601.3 336 86.3
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-169 599.7 387 78.3
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 3.8e-156 555.1 342 78.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.7e-151 539.7 345 75.9
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.6e-138 496.5 358 65.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.9e-132 475.3 357 63.6
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 4.3e-131 471.9 354 64.7
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.8e-130 469.2 364 62.1
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 3.6e-130 468.8 350 64.0
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.1e-129 467.2 341 62.8
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.4e-129 466.8 340 65.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.2e-128 463.8 359 61.8
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.2e-128 463.8 341 62.2
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.5e-128 463.4 359 61.6
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.6e-128 462.6 356 62.1
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.6e-128 462.6 363 63.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 3.4e-128 462.2 360 61.9
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.8e-128 461.5 344 62.2
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 7.6e-128 461.1 359 61.8
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 9.9e-128 460.7 340 62.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 9.9e-128 460.7 359 61.6
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.2e-127 459.5 335 63.6
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 6.4e-127 458.0 352 62.5
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.4e-127 457.6 342 62.9
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.4e-126 456.8 339 61.9
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 4.1e-126 455.3 339 62.2
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 7.1e-126 454.5 360 61.7
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 9.2e-126 454.1 341 61.6
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 9.2e-126 454.1 360 60.0
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 9.2e-126 454.1 354 60.7
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.5e-125 452.2 334 62.0
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 6.0e-125 451.4 340 61.5
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 6.0e-125 451.4 359 60.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.0e-124 450.7 354 60.2
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.0e-124 450.7 359 61.6
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.7e-124 449.9 361 59.3
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.3e-124 449.5 359 59.6
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 2.3e-124 449.5 341 61.3
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 6.6e-124 448.0 355 59.2
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 8.6e-124 447.6 366 60.7
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.5e-123 446.8 373 59.2
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.9e-123 446.4 361 60.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.5e-123 446.0 355 60.8
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 4.3e-123 445.3 360 58.3
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 5.6e-123 444.9 356 60.7
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.8e-122 442.6 334 61.4
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 4.7e-122 441.8 362 60.5
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 4.7e-122 441.8 331 62.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.1e-121 440.7 342 61.1
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.1e-121 440.7 351 59.5
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 2.4e-121 439.5 354 60.2
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 4.0e-121 438.7 351 58.7
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 5.2e-121 438.3 362 58.6
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 5.2e-121 438.3 351 60.4
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 6.8e-121 438.0 358 59.2
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.4e-120 435.3 350 60.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 7.6e-120 434.5 361 58.7
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 7.1e-118 427.9 403 52.1
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 9.3e-118 427.6 354 58.5
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 9.3e-118 427.6 354 58.5
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.7e-117 426.0 349 58.7
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.5e-117 425.6 361 56.0
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.3e-116 423.7 358 57.0
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 8.7e-116 421.0 320 62.2
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 8.7e-116 421.0 367 56.7
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.1e-115 420.6 433 51.3
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.5e-115 420.2 350 58.0
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.5e-115 420.2 355 58.9
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 4.8e-114 415.2 367 56.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 8.1e-114 414.5 353 58.1
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 6.9e-113 411.4 340 57.1
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.5e-112 410.2 367 55.0
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 6.4e-111 404.8 425 49.2
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.1e-110 404.1 489 45.2
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.4e-110 402.9 318 61.9
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 5.4e-110 401.7 359 56.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.4e-105 387.1 247 70.4
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.8e-105 386.7 352 53.4
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 4.0e-105 385.6 295 61.4
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 4.5e-104 382.1 363 52.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 5.8e-104 381.7 342 53.8
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.9e-102 376.7 314 58.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 3.5e-101 372.5 362 52.8
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.9e-101 371.3 357 48.2
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.3e-100 370.5 359 54.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 6.2e-98 361.7 388 46.9
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.1e-97 360.9 357 53.5
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.8e-92 343.6 348 51.4
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 2.3e-92 343.2 352 51.4
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.3e-90 337.4 317 53.6
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.1e-90 336.7 251 63.7
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.7e-85 319.7 298 55.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 4.6e-85 318.9 419 40.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.9e-83 313.5 206 68.9
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 8.2e-82 308.1 208 67.8
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 7.9e-77 291.6 187 81.8
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.9e-76 289.3 378 41.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.1e-75 287.7 156 79.5
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.1e-75 287.7 285 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.5e-75 287.3 412 38.8
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.7e-74 282.7 339 42.5
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.2e-64 251.1 344 41.0
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 9.4e-62 241.5 133 79.7
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.7e-59 232.3 131 75.6
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.8e-57 227.3 226 51.3
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.3e-50 204.5 255 42.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.3e-50 204.5 255 42.4
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.8e-41 174.1 182 46.7
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 3.1e-41 173.3 181 47.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 5.6e-38 162.5 123 55.3
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.2e-37 161.4 95 75.8
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.7e-34 151.0 152 51.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.3e-26 124.8 76 75.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.1e-20 105.1 243 30.9
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.7e-18 97.8 117 41.9
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.9e-18 97.1 87 50.6
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.0e-16 89.4 92 46.7
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.6e-07 59.3 102 37.3


User provided reference genes

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