Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16660 Brassica carinata HOM05D003658 ORTHO05D004457 7.4e-75 283.9 152 100.0
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 2.0e-51 206.1 165 73.3
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 2.0e-51 206.1 165 73.3
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 2.0e-51 206.1 165 73.3
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 2.0e-51 206.1 165 73.3
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 2.0e-51 206.1 165 73.3
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 7.4e-51 204.1 165 72.7
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 8.2e-50 200.7 165 71.5
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 2.4e-49 199.1 165 71.5
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 4.1e-49 198.4 165 71.5
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 4.1e-49 198.4 165 70.3
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 6.9e-49 197.6 165 70.3
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 5.0e-47 191.4 161 69.6
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 2.1e-45 186.0 159 67.9
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.2e-40 170.2 161 60.9
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 5.9e-40 167.9 160 61.2
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.1e-38 163.7 158 61.4
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 1.8e-36 156.4 161 57.8
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 1.8e-36 156.4 161 58.4
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 4.0e-36 155.2 161 57.1
MD03G1111500 Malus domestica HOM05D003658 ORTHO05D004457 5.2e-36 154.8 161 56.5
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 5.2e-36 154.8 161 55.9
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 6.7e-36 154.5 161 54.7
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 1.2e-35 153.7 161 57.8
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 1.2e-35 153.7 161 57.8
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 1.2e-35 153.7 161 57.8
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 1.5e-35 153.3 161 57.1
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 1.5e-35 153.3 161 57.1
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.0e-35 152.9 161 55.9
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 2.0e-35 152.9 161 57.1
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 2.6e-35 152.5 161 56.5
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 4.4e-35 151.8 161 54.7
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 5.7e-35 151.4 161 55.3
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 5.7e-35 151.4 158 55.7
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 9.7e-35 150.6 156 57.1
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.3e-34 150.2 161 55.3
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 1.3e-34 150.2 162 54.9
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 1.3e-34 150.2 161 55.9
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-34 149.8 161 54.7
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 1.7e-34 149.8 161 55.3
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 1.7e-34 149.8 161 54.7
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.7e-34 149.8 161 55.3
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.7e-34 149.8 160 53.8
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 2.8e-34 149.1 162 54.9
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 3.7e-34 148.7 160 53.8
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.8e-34 148.3 161 54.7
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 6.3e-34 147.9 161 55.3
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 8.2e-34 147.5 161 54.7
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 8.2e-34 147.5 158 55.1
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 8.2e-34 147.5 160 53.1
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 1.1e-33 147.1 158 55.7
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 1.1e-33 147.1 162 53.7
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.1e-33 147.1 160 53.8
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 1.1e-33 147.1 158 54.4
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.4e-33 146.7 158 55.7
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.4e-33 146.7 158 55.1
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.4e-33 146.7 157 54.8
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.8e-33 146.4 161 53.4
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 3.1e-33 145.6 160 54.4
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 4.1e-33 145.2 155 54.2
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 4.1e-33 145.2 161 52.8
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 4.1e-33 145.2 161 52.8
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 5.3e-33 144.8 161 53.4
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 7.0e-33 144.4 158 55.1
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 7.0e-33 144.4 160 52.5
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 9.1e-33 144.1 159 53.5
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 9.1e-33 144.1 158 53.2
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 9.1e-33 144.1 158 54.4
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 1.2e-32 143.7 158 53.8
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 2.0e-32 142.9 157 54.8
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 2.0e-32 142.9 155 54.2
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 3.5e-32 142.1 158 53.8
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 3.5e-32 142.1 162 53.1
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 4.5e-32 141.7 155 52.9
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 5.9e-32 141.4 158 53.2
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 7.7e-32 141.0 156 53.8
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 1.3e-31 140.2 156 53.2
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 1.7e-31 139.8 155 52.9
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 1.7e-31 139.8 160 50.6
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 1.7e-31 139.8 156 53.2
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 2.2e-31 139.4 156 51.9
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 2.2e-31 139.4 159 51.6
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 2.9e-31 139.0 161 52.8
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 3.8e-31 138.7 154 53.9
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 5.0e-31 138.3 157 51.6
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 5.0e-31 138.3 157 53.5
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 6.5e-31 137.9 155 51.0
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 6.5e-31 137.9 156 55.8
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 8.5e-31 137.5 158 51.3
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 8.5e-31 137.5 161 52.2
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 8.5e-31 137.5 155 52.9
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 1.9e-30 136.3 161 50.9
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 1.9e-30 136.3 160 51.2
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.5e-30 136.0 157 51.0
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.2e-30 135.6 161 47.8
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 3.2e-30 135.6 158 53.8
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 4.2e-30 135.2 155 52.3
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 5.5e-30 134.8 156 52.6
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 9.4e-30 134.0 160 50.0
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 1.2e-29 133.7 160 50.6
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 2.1e-29 132.9 158 52.5
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 2.7e-29 132.5 163 50.3
Os01g0570700 Oryza sativa ssp. japonica HOM05D003658 ORTHO05D004457 3.6e-29 132.1 161 49.7
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 4.7e-29 131.7 158 51.9
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 4.7e-29 131.7 161 48.4
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 6.1e-29 131.3 158 51.9
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 6.1e-29 131.3 154 53.2
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 8.0e-29 131.0 158 51.9
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 8.0e-29 131.0 158 51.9
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 8.0e-29 131.0 156 51.9
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 8.0e-29 131.0 158 53.2
Potri.008G216501 Populus trichocarpa HOM05D003658 ORTHO05D004457 1.4e-28 130.2 156 52.6
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 1.4e-28 130.2 158 51.3
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 1.4e-28 130.2 161 48.4
Lj4C607T5 Lonicera japonica HOM05D003658 ORTHO05D004457 2.3e-28 129.4 158 50.0
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 8.8e-28 127.5 154 50.6
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 2.0e-27 126.3 156 50.6
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 2.6e-27 125.9 156 49.4
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 3.4e-27 125.6 156 48.1
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 4.4e-27 125.2 156 49.4
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 5.7e-27 124.8 154 50.0
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 5.7e-27 124.8 156 50.0
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 7.5e-27 124.4 156 50.0
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 7.5e-27 124.4 160 50.0
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 9.8e-27 124.0 171 46.2
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 1.3e-26 123.6 154 50.0
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 2.2e-26 122.9 155 47.7
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.8e-26 121.7 155 47.1
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 6.3e-26 121.3 154 50.0
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 8.3e-26 120.9 159 44.0
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.1e-25 120.6 134 54.5
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 1.2e-24 117.1 155 43.2
Sc12g0005790 Simmondsia chinensis HOM05D003658 ORTHO05D004457 2.2e-23 112.8 141 51.8
BcaC03g16789 Brassica carinata HOM05D003658 ORTHO05D004457 6.5e-23 111.3 73 82.2
BolC2t10717H Brassica oleracea HOM05D003658 ORTHO05D004457 6.5e-23 111.3 73 82.2
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 9.5e-22 107.5 147 48.3
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.3e-20 102.8 118 53.4
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 8.3e-18 94.4 154 33.8
C05p22330 Brassica napus HOM05D003658 ORTHO05D004457 2.4e-17 92.8 114 51.8
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 2.4e-17 92.8 155 35.5
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 5.4e-17 91.7 121 45.5
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 2.9e-15 85.9 155 33.5
MBI17_g43656_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.1e-14 84.0 65 69.2
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.5e-14 83.6 111 45.9
Glyma.20G148741 Glycine max HOM05D003658 ORTHO05D004457 6.8e-12 74.7 64 59.4
Peaxi162Scf00809g00429 Petunia axillaris HOM05D003658 ORTHO05D004457 1.7e-10 70.1 127 37.8
Haze_26812 Corylus avellana HOM05D003658 ORTHO05D004457 1.0e-07 60.8 145 31.0


User provided reference genes

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