Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16336 Brassica carinata HOM05D021359 ORTHO05D016065 4.6e-166 587.8 290 100.0
C02p41570 Brassica napus HOM05D021359 ORTHO05D016065 3.8e-19 99.8 90 61.1
BolC2t10173H Brassica oleracea HOM05D021359 ORTHO05D016065 4.9e-19 99.4 94 60.6
A02p26140 Brassica napus HOM05D021359 ORTHO05D016065 2.1e-14 84.0 94 57.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-13 80.1 107 45.8
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.3e-13 79.3 115 47.0
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.5e-12 77.8 103 50.5
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.6e-12 77.0 115 47.0
BraA02t07609Z Brassica rapa HOM05D021359 ORTHO05D016065 2.6e-12 77.0 90 54.4
C04p44410 Brassica napus HOM05D002521 ORTHO05D016065 4.5e-12 76.3 89 51.7
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 7.6e-12 75.5 123 44.7
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 9.9e-12 75.1 115 46.1
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-11 74.3 123 43.9
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.9e-11 73.6 107 47.7
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 8.4e-11 72.0 106 46.2
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-09 67.8 122 41.8
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 7.9e-09 65.5 59 62.7
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 7.9e-09 65.5 119 40.3
CARHR036250 Cardamine hirsuta HOM05D000207 ORTHO05D001482 7.9e-09 65.5 41 75.6
Thhalv10011200m.g Eutrema salsugineum HOM05D000207 ORTHO05D001482 7.9e-09 65.5 41 75.6
AL1G52800 Arabidopsis lyrata HOM05D000207 ORTHO05D001482 1.0e-08 65.1 41 75.6
AT1G45160 Arabidopsis thaliana HOM05D000207 ORTHO05D001482 1.0e-08 65.1 41 75.6
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-08 64.7 119 39.5
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-08 64.7 119 39.5
BcaB04g17575 Brassica carinata HOM05D000207 ORTHO05D001482 1.8e-08 64.3 41 73.2
A08p06190 Brassica napus HOM05D000207 ORTHO05D001482 1.8e-08 64.3 41 73.2
BraA08t32619Z Brassica rapa HOM05D000207 ORTHO05D001482 1.8e-08 64.3 41 73.2
Sp1g33960 Schrenkiella parvula HOM05D000207 ORTHO05D001482 2.3e-08 63.9 41 73.2
BolC3t14772H Brassica oleracea HOM05D021359 ORTHO05D016065 5.1e-08 62.8 36 88.9
Carub.0001s3558 Capsella rubella HOM05D000207 ORTHO05D001482 8.7e-08 62.0 41 73.2
BcaC07g37270 Brassica carinata HOM05D000207 ORTHO05D001482 1.9e-07 60.8 41 70.7
C08p06980 Brassica napus HOM05D000207 ORTHO05D001482 1.9e-07 60.8 41 70.7
BolC8t47540H Brassica oleracea HOM05D000207 ORTHO05D001482 1.9e-07 60.8 41 70.7
AT2G18510 Arabidopsis thaliana HOM05D000428 ORTHO05D005608 3.3e-07 60.1 33 87.9
BcaC07g37513 Brassica carinata HOM05D002521 ORTHO05D016065 3.3e-07 60.1 44 63.6
Thhalv10022741m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 3.3e-07 60.1 33 87.9
Sp3g31970 Schrenkiella parvula HOM05D000428 ORTHO05D005608 3.3e-07 60.1 33 87.9
TWI09G0303 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 3.3e-07 60.1 33 87.9
BcaB03g16632 Brassica carinata HOM05D000428 ORTHO05D005608 5.6e-07 59.3 33 84.8
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 5.6e-07 59.3 33 84.8
Aa31LG5G17200 Aethionema arabicum HOM05D000207 ORTHO05D001482 7.4e-07 58.9 41 70.7
Aa31sc145G40 Aethionema arabicum HOM05D000207 ORTHO05D001482 7.4e-07 58.9 41 70.7
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 84.8
BcaB07g31658 Brassica carinata HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 81.8
BcaC04g22900 Brassica carinata HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 81.8
A09p11940 Brassica napus HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 81.8
C09p14060 Brassica napus HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 81.8
BolC9t54303H Brassica oleracea HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 81.8
BraA09t36839Z Brassica rapa HOM05D000428 ORTHO05D005608 7.4e-07 58.9 33 81.8
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 9.6e-07 58.5 33 84.8
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-06 58.2 91 40.7
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-06 58.2 91 40.7
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-06 58.2 91 40.7
Cc07_g09270 Coffea canephora HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
Nitab4.5_0001456g0190 Nicotiana tabacum HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
Nitab4.5_0003968g0050 Nicotiana tabacum HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
Peaxi162Scf00759g00212 Petunia axillaris HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
Solyc03g118800.3 Solanum lycopersicum HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
Sopen03g037750 Solanum pennellii HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
PGSC0003DMG400005746 Solanum tuberosum HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
PGSC0003DMG400008934 Solanum tuberosum HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
TWI53G1177 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 1.3e-06 58.2 33 84.8
Atru.chr12.2192 Acer truncatum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Actinidia19172 Actinidia chinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Actinidia35650 Actinidia chinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Aa31LG8G15550 Aethionema arabicum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Ah.03g139440 Amaranthus hybridus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Aqoxy5G01673 Aquilegia oxysepala HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
EL10Ac6g14921 Beta vulgaris HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
BcaC06g36421 Brassica carinata HOM05D000428 ORTHO05D005608 1.6e-06 57.8 35 77.1
A07p02180 Brassica napus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 81.8
BraA07t28012Z Brassica rapa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 81.8
CSS0012257 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CSS0018038 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CSS0045131 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CANSAT01G1769 Cannabis sativa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CARHR109120 Cardamine hirsuta HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Cpa.g.sc44.55 Carica papaya HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CiPaw.01G035300 Carya illinoinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CiPaw.02G015800 Carya illinoinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
AUR62003178 Chenopodium quinoa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
AUR62007997 Chenopodium quinoa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Ca_17089_v3 Cicer arietinum L. HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
ClCG05G007140 Citrullus lanatus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Ciclev10025862m.g Citrus clementina HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
COL.COLO4_22108 Corchorus olitorius HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Haze_25371 Corylus avellana HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
MELO3C006787.2 Cucumis melo HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
CsaV3_3G015880 Cucumis sativus L. HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
DCAR_025927 Daucus carota HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Dinv26816 Davidia involucrata HOM05D000001 ORTHO05D010258 1.6e-06 57.8 33 84.8
Dinv39964 Davidia involucrata HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Duzib147G0139 Durio zibethinus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Duzib264G0582 Durio zibethinus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
FvH4_7g10600 Fragaria vesca HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
FAN01G3018 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
FAN06G0286 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
FAN06G3568 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.6e-06 57.8 33 84.8
Glyma.09G001000 Glycine max HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Glyma.12G240700 Glycine max HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Gohir.D10G093100 Gossypium hirsutum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Gorai.011G102300 Gossypium raimondii HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
HanXRQChr05g0157731 Helianthus annuus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Lsat_1_v5_gn_5_24320 Lactuca sativa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Lj4C198T4 Lonicera japonica HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Lj3g0014328 Lotus japonicus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Lalb_Chr03g0043151 Lupinus albus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
MD07G1111200 Malus domestica HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Manes.02G141500 Manihot esculenta HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Medtr3g065190 Medicago truncatula HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Phvul.011G214800 Phaseolus vulgaris HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Psat5g120280 Pisum sativum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Potri.005G125300 Populus trichocarpa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Potri.007G028300 Populus trichocarpa HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
PGR044G2753 Punica granatum HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
QL06p045519 Quercus lobata HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
RcHm_v2.0_Chr2g0096981 Rosa chinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Sed0000925 Sechium edule HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Sed0010481 Sechium edule HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Hund16583 Selenicereus undatus HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Sc03g0000830 Simmondsia chinensis HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
THA.LOC104807442 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
THA.LOC104819794 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
Thecc.01G038800 Theobroma cacao HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
TPR.G24896 Trifolium pratense HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
TAR376G0105 Trochodendron aralioides HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
vmacro17854 Vaccinium macrocarpon HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
VMungo1127G1890 Vigna mungo HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
GSVIVG01018991001 Vitis vinifera HOM05D000428 ORTHO05D005608 1.6e-06 57.8 33 84.8
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
C07p04290 Brassica napus HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
BolC7t40824H Brassica oleracea HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
CDE04G3638 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
CDE07G0828 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
ECA246G0987 Erigeron canadensis HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 84.8
Mapoly0043s0056 Marchantia polymorpha HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 84.8
Os10g0457000 Oryza sativa ssp. japonica HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
Pp3c12_13810 Physcomitrium patens HOM05D000428 ORTHO05D005608 2.1e-06 57.4 33 81.8
arahy.Tifrunner.gnm1.ann1.FMI53U Arachis hypogaea HOM05D000428 ORTHO05D005608 2.8e-06 57.0 35 77.1
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 2.8e-06 57.0 33 84.8
Migut.L00561 Erythranthe guttata HOM05D000428 ORTHO05D005608 2.8e-06 57.0 33 84.8
SHI22921 Sapria himalayana HOM05D000428 ORTHO05D005608 2.8e-06 57.0 33 84.8
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 2.8e-06 57.0 33 81.8
TAR625G0488 Trochodendron aralioides HOM05D000428 ORTHO05D005608 2.8e-06 57.0 33 81.8
HPP92_009245 Vanilla planifolia HOM05D000428 ORTHO05D005608 2.8e-06 57.0 33 78.8
arahy.Tifrunner.gnm1.ann1.57NA14 Arachis hypogaea HOM05D000428 ORTHO05D005608 3.7e-06 56.6 33 81.8
arahy.Tifrunner.gnm1.ann1.IVLA97 Arachis hypogaea HOM05D000428 ORTHO05D005608 3.7e-06 56.6 33 81.8
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 3.7e-06 56.6 68 47.1
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 3.7e-06 56.6 68 47.1
Eucgr.H02772 Eucalyptus grandis HOM05D000428 ORTHO05D005608 3.7e-06 56.6 33 81.8
Sabra05G0102900 Salix brachista HOM05D000428 ORTHO05D005608 3.7e-06 56.6 33 81.8
MBI16_g35646_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 4.8e-06 56.2 33 81.8
Zm00001eb222330 Zea mays HOM05D000428 ORTHO05D005608 4.8e-06 56.2 33 81.8
C03p23840 Brassica napus HOM05D002521 ORTHO05D016065 6.2e-06 55.8 37 83.8
CBR_g39039 Chara braunii HOM05D000428 ORTHO05D005608 8.1e-06 55.5 33 75.8


User provided reference genes

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