Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15852 Brassica carinata HOM05D004425 ORTHO05D024261 4.6e-94 347.8 168 100.0
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 2.4e-58 229.2 200 64.5
A01p06600 Brassica napus HOM05D004425 ORTHO05D024261 6.5e-56 221.1 145 78.6
BraA05t21374Z Brassica rapa HOM05D004425 ORTHO05D024261 1.1e-39 167.2 186 54.3
BolC3t15257H Brassica oleracea HOM05D004425 ORTHO05D024261 1.5e-39 166.8 176 58.5
C03p29020 Brassica napus HOM05D004425 ORTHO05D024261 1.9e-39 166.4 176 58.5
C01p29530 Brassica napus HOM05D004425 ORTHO05D042383 6.3e-35 151.4 131 64.9
BolC1t02895H Brassica oleracea HOM05D004425 ORTHO05D042383 6.3e-35 151.4 131 64.9
A05p24870 Brassica napus HOM05D004425 ORTHO05D005783 7.0e-34 147.9 179 52.5
BcaC05g28762 Brassica carinata HOM05D004425 ORTHO05D005783 6.8e-29 131.3 65 93.8
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 2.2e-27 126.3 222 40.1
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 6.3e-27 124.8 220 40.5
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 1.4e-26 123.6 217 40.1
BcaC01g01120 Brassica carinata HOM05D004425 ORTHO05D095244 1.2e-25 120.6 58 94.8
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 7.7e-25 117.9 216 38.4
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 1.3e-24 117.1 222 38.7
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 4.7e-22 108.6 216 36.6
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 1.1e-18 97.4 241 34.0
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 1.8e-18 96.7 222 35.6
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.0e-16 90.9 224 32.1
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 3.8e-16 89.0 171 38.0
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 5.0e-16 88.6 210 33.8
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 6.6e-16 88.2 220 32.3
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 3.3e-15 85.9 222 32.4
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 4.3e-15 85.5 101 46.5
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 5.6e-15 85.1 50 78.0
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 5.6e-15 85.1 50 78.0
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 5.6e-15 85.1 50 78.0
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 5.6e-15 85.1 50 78.0
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 5.6e-15 85.1 106 46.2
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 9.5e-15 84.3 218 33.5
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 9.5e-15 84.3 218 33.5
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 2.1e-14 83.2 50 76.0
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 2.1e-14 83.2 50 76.0
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 2.1e-14 83.2 50 76.0
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 2.1e-14 83.2 51 76.5
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 2.8e-14 82.8 183 32.2
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 2.8e-14 82.8 50 76.0
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 2.8e-14 82.8 50 76.0
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 4.7e-14 82.0 50 74.0
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 4.7e-14 82.0 232 31.0
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 6.1e-14 81.6 50 76.0
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 6.1e-14 81.6 50 76.0
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 6.1e-14 81.6 50 76.0
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 6.1e-14 81.6 50 76.0
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 6.1e-14 81.6 50 76.0
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 8.0e-14 81.3 50 76.0
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 8.0e-14 81.3 50 76.0
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 8.0e-14 81.3 218 31.2
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 8.0e-14 81.3 50 74.0
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 8.0e-14 81.3 50 74.0
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 8.0e-14 81.3 50 74.0
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 1.0e-13 80.9 50 74.0
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 1.0e-13 80.9 50 76.0
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 1.0e-13 80.9 50 74.0
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 1.0e-13 80.9 50 74.0
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 1.0e-13 80.9 50 76.0
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 1.4e-13 80.5 50 74.0
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 1.4e-13 80.5 50 76.0
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 1.4e-13 80.5 50 74.0
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 1.4e-13 80.5 50 74.0
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 1.4e-13 80.5 50 76.0
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 1.8e-13 80.1 50 74.0
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 1.8e-13 80.1 50 72.0
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 74.0
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 2.3e-13 79.7 66 60.6
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 76.0
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 76.0
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 76.0
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 76.0
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 76.0
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 72.0
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 72.0
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 2.3e-13 79.7 50 72.0
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 3.0e-13 79.3 50 74.0
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 4.0e-13 79.0 50 72.0
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 4.0e-13 79.0 50 72.0
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 4.0e-13 79.0 50 74.0
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 4.0e-13 79.0 50 72.0
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 74.0
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 74.0
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 72.0
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 72.0
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 72.0
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 74.0
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 5.2e-13 78.6 50 74.0
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 6.8e-13 78.2 50 72.0
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 6.8e-13 78.2 50 68.0
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 6.8e-13 78.2 52 67.3
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 8.9e-13 77.8 50 70.0
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 8.9e-13 77.8 50 74.0
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 1.2e-12 77.4 50 72.0
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 1.2e-12 77.4 50 70.0
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 1.2e-12 77.4 50 68.0
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 1.2e-12 77.4 50 72.0
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 1.2e-12 77.4 50 72.0
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 1.2e-12 77.4 50 70.0
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 1.5e-12 77.0 50 70.0
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 1.5e-12 77.0 50 70.0
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 1.5e-12 77.0 50 70.0
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 1.5e-12 77.0 50 70.0
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 1.5e-12 77.0 50 70.0
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 2.0e-12 76.6 50 70.0
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 2.0e-12 76.6 50 70.0
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 2.0e-12 76.6 50 70.0
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 2.0e-12 76.6 50 70.0
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 2.0e-12 76.6 50 72.0
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 2.0e-12 76.6 79 51.9
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 2.6e-12 76.3 50 70.0
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 2.6e-12 76.3 50 70.0
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 3.4e-12 75.9 50 68.0
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 3.4e-12 75.9 50 70.0
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 3.4e-12 75.9 50 70.0
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 3.4e-12 75.9 50 72.0
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 5.7e-12 75.1 50 66.0
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 7.5e-12 74.7 50 68.0
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 7.5e-12 74.7 50 66.0
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 7.5e-12 74.7 50 70.0
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 7.5e-12 74.7 52 65.4
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.3e-11 73.9 53 66.0
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 4.9e-11 72.0 50 68.0
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 1.1e-10 70.9 50 66.0
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 1.4e-10 70.5 50 66.0
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 1.4e-10 70.5 50 68.0
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 1.2e-09 67.4 50 64.0
BcaB07g33352 Brassica carinata HOM05D004425 ORTHO05D005783 1.6e-09 67.0 132 40.2
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 3.5e-09 65.9 50 66.0
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 4.6e-09 65.5 74 50.0
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 3.9e-08 62.4 36 77.8
BcaB07g33550 Brassica carinata HOM05D001239 ORTHO05D011709 6.6e-08 61.6 73 47.9
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 2.5e-07 59.7 34 79.4
ECA232G4004 Erigeron canadensis HOM05D004425 ORTHO05D005783 7.3e-07 58.2 34 73.5


User provided reference genes

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