Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 2.4e-119 432.2 221 100.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.2e-118 429.9 221 99.1
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.3e-117 426.4 221 98.2
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.9e-117 424.9 221 97.7
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.9e-117 424.9 221 98.2
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.9e-116 422.5 221 96.8
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-116 422.5 221 96.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 7.3e-116 420.6 221 96.4
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 9.6e-116 420.2 221 96.4
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 8.1e-115 417.2 221 95.5
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 8.1e-115 417.2 221 96.4
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 2.4e-114 415.6 221 95.9
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 3.1e-114 415.2 235 91.9
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 3.1e-114 415.2 229 93.4
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.1e-108 396.7 222 91.0
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.5e-108 396.4 222 91.4
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.3e-107 393.3 222 91.0
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.1e-106 390.2 222 91.4
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.9e-96 354.8 221 82.8
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 6.7e-93 344.4 219 79.0
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 2.2e-75 286.2 219 65.8
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 5.5e-71 271.6 219 63.0
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.0e-69 267.3 219 61.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.8e-69 266.5 219 61.6
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.8e-69 266.5 218 63.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.9e-69 265.4 219 63.5
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.5e-68 263.5 219 62.1
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.0e-68 263.1 219 61.6
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.6e-68 262.7 220 61.8
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 5.7e-68 261.5 222 62.2
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 5.7e-68 261.5 219 61.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.3e-67 260.4 214 63.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.3e-67 260.4 220 61.4
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.7e-67 260.0 216 63.0
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.2e-67 259.6 218 62.8
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 4.8e-67 258.5 223 61.9
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 8.2e-67 257.7 219 63.5
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 7.0e-66 254.6 219 60.7
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 7.0e-66 254.6 205 65.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 9.1e-66 254.2 220 60.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-65 253.8 219 60.3
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.5e-65 251.9 219 59.8
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 7.7e-65 251.1 219 61.6
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.0e-64 250.8 218 61.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.7e-64 250.0 218 60.1
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.7e-64 250.0 222 60.4
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 2.2e-64 249.6 218 61.5
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 58.9
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 58.9
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 58.9
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-64 248.4 219 58.9
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-64 248.4 219 58.9
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-63 246.9 219 58.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-63 246.9 219 58.4
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.9e-63 246.5 218 61.0
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-63 245.7 219 58.4
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.2e-63 245.7 248 54.8
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 7.2e-63 244.6 224 60.3
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.8e-61 240.0 221 57.5
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.3e-61 239.6 219 58.9
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.3e-61 239.6 220 58.2
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 3.0e-61 239.2 218 60.1
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 4.4e-60 235.3 220 57.3
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 7.5e-60 234.6 219 58.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.7e-59 233.4 194 60.8
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.7e-59 232.3 222 57.2
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 6.3e-59 231.5 190 64.7
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.1e-58 230.7 215 58.6
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.4e-58 230.3 202 59.4
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.4e-58 230.3 224 56.7
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.8e-58 229.9 222 55.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.8e-58 229.9 222 56.3
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.8e-58 229.9 224 57.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.4e-58 229.6 197 59.9
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 3.1e-58 229.2 219 55.7
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 4.1e-58 228.8 203 60.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.1e-58 228.8 218 55.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.3e-58 228.4 220 55.5
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 7.0e-58 228.0 222 57.2
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.2e-57 227.3 218 55.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.6e-57 226.9 197 59.9
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.0e-57 226.5 218 56.4
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.7e-57 226.1 203 59.6
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.5e-57 225.7 226 54.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 4.5e-57 225.3 208 59.1
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 4.5e-57 225.3 192 59.9
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 5.9e-57 224.9 218 55.0
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 7.7e-57 224.6 224 55.8
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 7.7e-57 224.6 222 55.4
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.0e-56 224.2 194 59.8
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.0e-56 224.2 194 59.8
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.3e-56 223.8 219 53.4
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 3.8e-56 222.2 193 62.2
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 5.0e-56 221.9 218 55.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 5.0e-56 221.9 218 57.8
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.1e-55 220.7 189 62.4
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 3.2e-55 219.2 224 54.0
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 3.2e-55 219.2 234 53.8
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 5.5e-55 218.4 201 59.2
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 5.5e-55 218.4 212 56.6
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 1.6e-54 216.9 232 51.7
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.6e-54 216.9 216 55.6
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.7e-54 216.1 219 56.6
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 8.0e-54 214.5 204 55.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.4e-53 213.8 124 91.1
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-53 212.6 200 57.5
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 6.8e-53 211.5 255 48.6
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 8.8e-53 211.1 255 49.8
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 4.4e-52 208.8 214 57.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.2e-51 206.5 218 50.9
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.8e-51 206.1 185 60.0
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.3e-51 204.9 164 65.2
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.4e-50 203.8 230 50.0
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.4e-50 203.0 235 50.6
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.1e-50 202.6 220 50.9
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 8.5e-48 194.5 205 53.2
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.6e-46 189.1 264 43.6
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.3e-45 186.4 196 54.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.5e-44 183.7 216 50.9
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 9.8e-44 181.0 141 72.3
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 2.2e-43 179.9 195 52.3
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 3.7e-43 179.1 326 37.1
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 6.3e-43 178.3 192 54.7
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 3.5e-41 172.6 250 43.6
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.6e-40 168.3 154 59.1
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.6e-38 163.7 141 66.7
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.6e-38 162.5 137 66.4
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.2e-37 158.7 145 59.3
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.8e-37 158.3 146 57.5
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 4.4e-36 155.6 173 52.6
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 9.8e-36 154.5 134 60.4
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.4e-34 150.6 170 51.2
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 5.0e-32 142.1 168 51.8
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.8e-29 131.7 112 66.1
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.5e-28 130.6 95 64.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.4e-28 129.4 143 51.7
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.3e-23 112.8 181 38.1
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 6.2e-22 108.6 180 37.2
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 6.2e-22 108.6 178 36.0
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 3.7e-19 99.4 91 57.1
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 3.7e-19 99.4 136 44.9
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.4e-18 96.7 116 47.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.7e-17 93.2 151 41.7
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.0e-16 89.7 183 32.8
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.4e-13 80.9 60 58.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.1e-13 79.7 93 48.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.4e-12 76.3 96 45.8
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.9e-11 73.2 50 70.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.5e-09 66.2 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 2.3e-08 63.5 146 34.2
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 3.3e-07 59.7 163 33.1


User provided reference genes

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