Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 5.0e-171 604.7 400 100.0
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 2.0e-164 582.8 403 96.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-163 579.7 403 95.8
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 6.5e-139 498.0 415 85.1
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 6.3e-134 481.5 411 75.9
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 2.4e-133 479.6 424 81.4
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.3e-131 473.8 393 75.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.3e-126 457.2 432 75.2
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-123 447.2 407 75.4
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.7e-123 446.8 341 82.4
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 7.3e-122 441.4 434 75.8
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 4.7e-121 438.7 423 77.5
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 4.4e-119 432.2 440 71.8
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 3.7e-118 429.1 432 73.8
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-115 421.0 318 77.0
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.9e-114 416.8 442 69.5
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 4.3e-114 415.6 436 71.6
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 5.8e-111 405.2 411 70.1
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.7e-110 403.7 433 70.4
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 6.2e-105 385.2 405 73.3
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 3.5e-100 369.4 461 65.7
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.4e-80 303.5 355 53.5
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.4e-80 303.5 355 54.4
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.3e-80 302.4 357 55.7
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.5e-79 300.8 355 53.8
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.5e-79 300.8 372 55.1
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.9e-78 296.6 349 55.9
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 2.1e-76 290.4 355 52.1
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.1e-76 290.4 375 52.8
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.3e-75 287.0 344 51.7
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.9e-75 286.2 355 54.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.9e-75 286.2 329 55.9
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.1e-74 284.6 349 59.9
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.5e-74 284.3 361 54.3
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 9.6e-74 281.6 375 55.5
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.3e-73 281.2 379 55.4
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 4.8e-73 279.3 359 54.0
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 4.8e-73 279.3 358 55.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 6.2e-73 278.9 360 51.4
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.1e-72 278.1 379 54.9
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.4e-72 277.7 361 55.4
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.8e-72 277.3 382 55.0
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.2e-71 274.6 369 51.5
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.2e-71 274.6 380 51.3
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.2e-71 274.6 379 57.0
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.5e-71 274.2 353 60.1
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 2.0e-71 273.9 363 53.2
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 4.5e-71 272.7 303 70.3
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 4.5e-71 272.7 359 52.6
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 4.5e-71 272.7 332 51.8
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.8e-71 272.3 384 55.2
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.3e-70 271.2 373 51.5
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.9e-70 270.0 365 51.0
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 3.8e-70 269.6 374 48.1
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 4.9e-70 269.2 355 53.8
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 4.9e-70 269.2 301 56.1
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.9e-70 269.2 361 54.6
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 8.4e-70 268.5 350 57.7
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.4e-69 267.7 338 50.0
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 2.5e-69 266.9 354 49.4
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 9.3e-69 265.0 369 50.7
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 2.7e-68 263.5 368 57.9
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 2.7e-68 263.5 354 50.6
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 2.7e-68 263.5 388 50.5
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 3.5e-68 263.1 371 50.1
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.5e-68 263.1 364 49.7
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 3.5e-68 263.1 357 50.1
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.3e-67 261.2 365 52.9
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 2.3e-67 260.4 281 62.3
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 3.0e-67 260.0 356 53.1
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 6.7e-67 258.8 322 58.7
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.5e-66 256.9 419 46.8
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.3e-65 254.6 365 52.3
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 1.3e-65 254.6 339 52.8
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.3e-65 252.3 354 53.4
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.1e-64 251.5 350 54.9
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.8e-64 250.8 352 53.1
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 3.1e-64 250.0 361 56.2
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 6.9e-64 248.8 375 51.7
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 6.9e-64 248.8 385 50.1
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 6.9e-64 248.8 417 48.7
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.0e-63 247.3 374 50.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 4.5e-63 246.1 409 52.1
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.6e-63 245.4 365 49.0
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.2e-62 243.8 383 48.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.8e-62 243.0 369 49.1
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 3.8e-62 243.0 370 51.9
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.1e-61 241.5 370 48.1
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.1e-61 241.5 354 50.6
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.5e-61 240.4 368 50.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 4.2e-61 239.6 379 52.2
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 4.2e-61 239.6 383 49.3
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 4.2e-61 239.6 376 49.7
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.5e-61 239.2 365 51.5
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.6e-60 237.7 351 50.1
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 4.6e-60 236.1 349 48.7
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 6.1e-60 235.7 368 51.1
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 6.1e-60 235.7 369 51.2
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.0e-59 235.0 385 45.2
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.3e-59 234.6 358 44.7
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.8e-59 234.2 370 50.5
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 6.7e-59 232.3 359 53.5
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.9e-58 230.7 377 44.8
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.9e-58 230.7 377 44.8
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 7.4e-58 228.8 388 50.3
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 2.8e-57 226.9 169 69.8
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 3.7e-57 226.5 363 51.0
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.7e-57 226.5 350 47.7
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 4.8e-57 226.1 408 50.5
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.1e-56 224.9 361 48.2
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.1e-56 224.9 245 64.1
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.8e-56 224.2 387 48.8
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 5.3e-56 222.6 322 47.8
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 6.9e-56 222.2 334 50.6
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.6e-55 220.3 366 49.5
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.6e-55 220.3 366 49.5
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 7.7e-55 218.8 369 51.2
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.7e-54 217.6 382 44.5
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 5.0e-54 216.1 339 46.9
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 6.5e-54 215.7 266 54.5
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 8.5e-54 215.3 339 52.5
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 2.5e-53 213.8 361 43.8
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-53 212.6 258 57.4
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.1e-52 210.7 321 52.6
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 7.9e-52 208.8 210 77.1
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.3e-51 207.2 322 52.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.3e-51 207.2 364 46.2
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 2.3e-51 207.2 331 51.7
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.1e-51 206.1 377 45.4
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-50 204.9 306 49.0
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 2.8e-49 200.3 269 53.5
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 8.2e-49 198.7 278 47.5
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.5e-47 194.5 343 43.7
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.6e-47 193.7 275 48.4
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 5.9e-47 192.6 276 52.9
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.3e-46 191.4 323 44.9
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 5.5e-45 186.0 259 47.9
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 7.2e-45 185.7 174 60.3
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.6e-44 184.5 156 68.6
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.1e-44 184.1 203 54.7
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.1e-44 184.1 265 44.9
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 2.0e-42 177.6 119 68.9
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 2.4e-40 170.6 194 51.5
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 4.7e-36 156.4 163 67.5
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.0e-35 155.2 153 70.6
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-34 151.8 254 52.8
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.9e-30 137.1 251 45.8
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 2.5e-29 134.0 243 44.4
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.1e-28 131.0 102 73.5
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.4e-24 118.2 145 55.2
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 1.8e-19 101.3 90 45.6
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 1.7e-09 68.2 95 42.1
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 2.2e-09 67.8 92 43.5
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 4.9e-09 66.6 131 42.0
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 8.3e-09 65.9 102 39.2
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.8e-08 64.7 92 40.2
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.8e-08 64.7 92 40.2
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 1.8e-08 64.7 102 36.3
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.4e-08 64.3 102 37.3
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 2.4e-08 64.3 100 37.0
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 4.1e-08 63.5 92 40.2
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 5.4e-08 63.2 105 39.0
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 7.0e-08 62.8 92 41.3
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 9.2e-08 62.4 92 39.1
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 1.2e-07 62.0 40 67.5
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.6e-07 61.6 40 60.0
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 7.8e-07 59.3 35 68.6
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 1.0e-06 58.9 102 35.3
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 1.0e-06 58.9 53 52.8
TPR.G21570 Trifolium pratense HOM05D005264 ORTHO05D005428 1.0e-06 58.9 53 52.8
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 1.3e-06 58.5 32 68.8
Ca_03040_v3 Cicer arietinum L. HOM05D005264 ORTHO05D005428 1.7e-06 58.2 53 52.8
DCAR_030406 Daucus carota HOM05D005264 ORTHO05D005428 3.0e-06 57.4 33 69.7
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 3.0e-06 57.4 33 69.7
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 3.0e-06 57.4 33 69.7
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 3.0e-06 57.4 33 69.7
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 3.9e-06 57.0 104 37.5
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 3.9e-06 57.0 98 34.7
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 5.0e-06 56.6 53 50.9
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 6.6e-06 56.2 51 51.0
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 6.6e-06 56.2 33 66.7
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 6.6e-06 56.2 33 66.7
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 6.6e-06 56.2 40 62.5
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 8.6e-06 55.8 33 63.6


User provided reference genes

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