Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g12972 Brassica carinata HOM05D001354 ORTHO05D027597 1.9e-19 98.2 51 100.0
BcaC06g32097 Brassica carinata HOM05D001354 ORTHO05D007486 4.7e-18 93.6 52 98.1
Thhalv10013128m.g Eutrema salsugineum HOM05D001354 ORTHO05D007486 1.2e-13 79.0 61 73.8
Sp6g38800 Schrenkiella parvula HOM05D001354 ORTHO05D007486 1.2e-13 79.0 61 73.8
CARHR209330 Cardamine hirsuta HOM05D001354 ORTHO05D007486 4.6e-13 77.0 61 72.1
CsaV3_6G040720 Cucumis sativus L. HOM05D001354 ORTHO05D007486 6.0e-13 76.6 60 70.0
Manes.08G026300 Manihot esculenta HOM05D001354 ORTHO05D007486 6.0e-13 76.6 61 68.9
THA.LOC104826945 Tarenaya hassleriana HOM05D001354 ORTHO05D007486 6.0e-13 76.6 61 70.5
Cpa.g.sc5.5 Carica papaya HOM05D001354 ORTHO05D007486 7.8e-13 76.3 60 71.7
Thecc.05G090900 Theobroma cacao HOM05D001354 ORTHO05D007486 7.8e-13 76.3 60 71.7
AL6G13540 Arabidopsis lyrata HOM05D001354 ORTHO05D007486 1.0e-12 75.9 61 70.5
AT5G03940 Arabidopsis thaliana HOM05D001354 ORTHO05D007486 1.0e-12 75.9 61 70.5
Carub.0006s0289 Capsella rubella HOM05D001354 ORTHO05D007486 1.0e-12 75.9 61 70.5
Ciclev10011285m.g Citrus clementina HOM05D001354 ORTHO05D007486 2.3e-12 74.7 60 68.3
Cc06_g05970 Coffea canephora HOM05D001354 ORTHO05D007486 2.3e-12 74.7 60 70.0
MELO3C024550.2 Cucumis melo HOM05D001354 ORTHO05D007486 2.3e-12 74.7 60 68.3
Aqoxy4G02758 Aquilegia oxysepala HOM05D001354 ORTHO05D007486 3.9e-12 73.9 60 68.3
Dinv31698 Davidia involucrata HOM05D001354 ORTHO05D007486 3.9e-12 73.9 60 68.3
Duzib128G1904 Durio zibethinus HOM05D001354 ORTHO05D007486 5.1e-12 73.6 60 68.3
Gohir.A04G061900 Gossypium hirsutum HOM05D001354 ORTHO05D007486 5.1e-12 73.6 60 68.3
Gorai.009G401100 Gossypium raimondii HOM05D001354 ORTHO05D007486 5.1e-12 73.6 60 68.3
TWI74G0096 Tripterygium wilfordii HOM05D001354 ORTHO05D007486 5.1e-12 73.6 61 67.2
A10p32190 Brassica napus HOM05D001354 ORTHO05D007486 8.7e-12 72.8 63 69.8
BraA10t45262Z Brassica rapa HOM05D001354 ORTHO05D007486 8.7e-12 72.8 63 69.8
QL07p038630 Quercus lobata HOM05D001354 ORTHO05D007486 8.7e-12 72.8 60 66.7
SGA_v2.0_scaffold35G14056 Striga asiatica HOM05D001354 ORTHO05D007486 8.7e-12 72.8 59 67.8
GSVIVG01033862001 Vitis vinifera HOM05D001354 ORTHO05D007486 8.7e-12 72.8 61 65.6
CANSAT64G2635 Cannabis sativa HOM05D001354 ORTHO05D007486 1.1e-11 72.4 60 66.7
Cfa009072 Carpinus fangiana HOM05D001354 ORTHO05D007486 1.1e-11 72.4 60 66.7
HanXRQChr08g0229841 Helianthus annuus HOM05D001354 ORTHO05D007486 1.1e-11 72.4 59 66.1
Oeu017685.1 Olea europaea HOM05D001354 ORTHO05D007486 1.1e-11 72.4 59 66.1
Potri.016G078600 Populus trichocarpa HOM05D001354 ORTHO05D007486 1.1e-11 72.4 61 65.6
Atru.chr8.1482 Acer truncatum HOM05D001354 ORTHO05D007486 1.5e-11 72.0 61 65.6
CAN.G397.64 Capsicum annuum HOM05D001354 ORTHO05D007486 1.5e-11 72.0 60 66.7
Lsat_1_v5_gn_9_20661 Lactuca sativa HOM05D001354 ORTHO05D007486 1.5e-11 72.0 59 66.1
Nitab4.5_0000692g0200 Nicotiana tabacum HOM05D001354 ORTHO05D007486 1.5e-11 72.0 60 66.7
PGR004G0555 Punica granatum HOM05D001354 ORTHO05D007486 1.5e-11 72.0 60 66.7
TAR369G1154 Trochodendron aralioides HOM05D001354 ORTHO05D007486 1.5e-11 72.0 60 68.3
Gohir.D04G098700 Gossypium hirsutum HOM05D001354 ORTHO05D007486 1.9e-11 71.6 60 66.7
Sed0016317 Sechium edule HOM05D001354 ORTHO05D007486 2.5e-11 71.2 59 67.8
ECA247G1665 Erigeron canadensis HOM05D001354 ORTHO05D007486 3.3e-11 70.9 59 66.1
Peaxi162Scf00404g00116 Petunia axillaris HOM05D001354 ORTHO05D007486 3.3e-11 70.9 60 65.0
ClCG04G010090 Citrullus lanatus HOM05D001354 ORTHO05D007486 4.3e-11 70.5 42 83.3
Migut.L01789 Erythranthe guttata HOM05D001354 ORTHO05D007486 4.3e-11 70.5 59 64.4
Solyc09g009940.3 Solanum lycopersicum HOM05D001354 ORTHO05D007486 4.3e-11 70.5 60 65.0
Sopen09g004690 Solanum pennellii HOM05D001354 ORTHO05D007486 4.3e-11 70.5 60 65.0
PGSC0003DMG400008871 Solanum tuberosum HOM05D001354 ORTHO05D007486 4.3e-11 70.5 60 65.0
C09p72990 Brassica napus HOM05D001354 ORTHO05D007486 5.6e-11 70.1 63 66.7
CDE04G0653 Ceratophyllum demersum HOM05D001354 ORTHO05D007486 5.6e-11 70.1 60 63.3
CDE07G0063 Ceratophyllum demersum HOM05D001354 ORTHO05D007486 5.6e-11 70.1 60 63.3
Eucgr.A02656 Eucalyptus grandis HOM05D001354 ORTHO05D007486 7.3e-11 69.7 60 61.7
Prupe.7G104500 Prunus persica HOM05D001354 ORTHO05D007486 7.3e-11 69.7 59 64.4
BolC9t60034H Brassica oleracea HOM05D001354 ORTHO05D007486 9.6e-11 69.3 64 67.2
CSS0014332 Camellia sinensis var. sinensis HOM05D001354 ORTHO05D007486 9.6e-11 69.3 42 81.0
MBI11_g26443_MAGBIO Magnolia biondii HOM05D001354 ORTHO05D007486 9.6e-11 69.3 60 65.0
MSTRG.10373 Avicennia marina HOM05D001354 ORTHO05D007486 1.3e-10 68.9 42 81.0
MSTRG.26635 Avicennia marina HOM05D001354 ORTHO05D007486 1.3e-10 68.9 59 64.4
MD12G1027100 Malus domestica HOM05D001354 ORTHO05D007486 1.3e-10 68.9 59 62.7
MD14G1027200 Malus domestica HOM05D001354 ORTHO05D007486 1.3e-10 68.9 59 62.7
Medtr7g104890 Medicago truncatula HOM05D001354 ORTHO05D007486 1.3e-10 68.9 60 61.7
Hund19917 Selenicereus undatus HOM05D001354 ORTHO05D007486 1.3e-10 68.9 63 60.3
arahy.Tifrunner.gnm1.ann1.6W7F9R Arachis hypogaea HOM05D001354 ORTHO05D007486 2.1e-10 68.2 59 61.0
Potri.006G211500 Populus trichocarpa HOM05D001354 ORTHO05D007486 2.1e-10 68.2 61 62.3
DCAR_020740 Daucus carota HOM05D001354 ORTHO05D007486 2.8e-10 67.8 42 76.2
Sed0006925 Sechium edule HOM05D001354 ORTHO05D007486 2.8e-10 67.8 61 63.9
Glyma.03G196900 Glycine max HOM05D001354 ORTHO05D007486 3.6e-10 67.4 61 59.0
Glyma.19G194985 Glycine max HOM05D001354 ORTHO05D007486 3.6e-10 67.4 61 59.0
PSO384G2091 Papaver somniferum HOM05D001354 ORTHO05D007486 3.6e-10 67.4 63 65.1
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 3.6e-10 67.4 61 60.7
VMungo1383G1548 Vigna mungo HOM05D001354 ORTHO05D007486 3.6e-10 67.4 61 59.0
CiPaw.10G010900 Carya illinoinensis HOM05D001354 ORTHO05D007486 4.8e-10 67.0 42 81.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 6.2e-10 66.6 60 61.7
Ca_09014_v3 Cicer arietinum L. HOM05D001354 ORTHO05D007486 6.2e-10 66.6 60 58.3
Duzib093G0955 Durio zibethinus HOM05D001354 ORTHO05D007486 6.2e-10 66.6 60 61.7
Lj2A139G33 Lonicera japonica HOM05D001354 ORTHO05D007486 6.2e-10 66.6 40 80.0
CiPaw.09G015300 Carya illinoinensis HOM05D001354 ORTHO05D007486 8.1e-10 66.2 60 61.7
Lj1g0015071 Lotus japonicus HOM05D001354 ORTHO05D007486 8.1e-10 66.2 60 58.3
Phvul.001G191200 Phaseolus vulgaris HOM05D001354 ORTHO05D007486 8.1e-10 66.2 61 57.4
AUR62006196 Chenopodium quinoa HOM05D001354 ORTHO05D007486 1.8e-09 65.1 61 57.4
AUR62037024 Chenopodium quinoa HOM05D001354 ORTHO05D007486 2.4e-09 64.7 61 57.4
Lj1g0026731 Lotus japonicus HOM05D001354 ORTHO05D007486 2.4e-09 64.7 60 56.7
PSO339G0273 Papaver somniferum HOM05D001354 ORTHO05D007486 2.4e-09 64.7 63 61.9
Lalb_Chr25g0288291 Lupinus albus HOM05D001354 ORTHO05D007486 4.0e-09 63.9 42 71.4
Ah.15g090690 Amaranthus hybridus HOM05D001354 ORTHO05D007486 5.3e-09 63.5 63 60.3
TAR623G0908 Trochodendron aralioides HOM05D001354 ORTHO05D007486 6.9e-09 63.2 43 79.1
HPP92_009892 Vanilla planifolia HOM05D001354 ORTHO05D007486 1.2e-08 62.4 61 55.7
BcaB05g21794 Brassica carinata HOM05D001354 ORTHO05D007486 1.5e-08 62.0 61 59.0
BcaB05g21818 Brassica carinata HOM05D001354 ORTHO05D096150 1.5e-08 62.0 61 59.0
BcaC03g12975 Brassica carinata HOM05D001354 ORTHO05D007486 1.5e-08 62.0 61 59.0
C02p01620 Brassica napus HOM05D001354 ORTHO05D007486 1.5e-08 62.0 61 59.0
BolC2t06127H Brassica oleracea HOM05D001354 ORTHO05D007486 1.5e-08 62.0 61 59.0
BraA02t04793Z Brassica rapa HOM05D001354 ORTHO05D007486 1.5e-08 62.0 61 59.0
FvH4_6g19110 Fragaria vesca HOM05D001354 ORTHO05D007486 1.5e-08 62.0 60 60.0
FAN14G3297 Fragaria x ananassa HOM05D001354 ORTHO05D027597 1.5e-08 62.0 60 60.0
RcHm_v2.0_Chr3g0474211 Rosa chinensis HOM05D001354 ORTHO05D007486 1.5e-08 62.0 60 60.0
ATR0776G078 Amborella trichopoda HOM05D001354 ORTHO05D007486 2.6e-08 61.2 62 56.5
Sc02g0000320 Simmondsia chinensis HOM05D001354 ORTHO05D007486 2.6e-08 61.2 61 59.0
FAN02G4160 Fragaria x ananassa HOM05D001354 ORTHO05D007486 4.4e-08 60.5 60 58.3
FAN14G3045 Fragaria x ananassa HOM05D001354 ORTHO05D007486 4.4e-08 60.5 60 58.3
FAN05G2413 Fragaria x ananassa HOM05D001354 ORTHO05D007486 5.8e-08 60.1 60 58.3
Lalb_Chr20g0111661 Lupinus albus HOM05D001354 ORTHO05D007486 5.8e-08 60.1 61 52.5
TPR.G23362 Trifolium pratense HOM05D001354 ORTHO05D007486 1.1e-06 55.8 39 69.2
Sc02g0003670 Simmondsia chinensis HOM05D001354 ORTHO05D007486 1.4e-06 55.5 37 70.3
COL.COLO4_29709 Corchorus olitorius HOM05D001354 ORTHO05D007486 5.4e-06 53.5 42 69.0


User provided reference genes

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