Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12764 Brassica carinata HOM05D001374 ORTHO05D013421 2.8e-55 218.4 110 100.0
C04p02560 Brassica napus HOM05D001374 ORTHO05D013421 5.4e-51 204.1 104 98.1
BolC4t21900H Brassica oleracea HOM05D001374 ORTHO05D013421 5.4e-51 204.1 104 98.1
BolC7t43598H Brassica oleracea HOM05D001374 ORTHO05D013421 9.2e-51 203.4 108 94.4
C07p30590 Brassica napus HOM05D001374 ORTHO05D013421 2.6e-45 185.3 128 78.1
C03p83240 Brassica napus HOM05D001374 ORTHO05D013421 8.3e-44 180.3 122 77.9
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 3.3e-40 168.3 147 64.6
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 3.3e-40 168.3 147 64.6
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 6.8e-38 160.6 147 63.3
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 1.5e-37 159.5 147 63.3
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 1.5e-37 159.5 147 63.3
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 2.0e-37 159.1 150 60.7
BraA04t17049Z Brassica rapa HOM05D001374 ORTHO05D013421 3.4e-37 158.3 135 67.4
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 3.7e-36 154.8 150 59.3
BcaC01g03668 Brassica carinata HOM05D001374 ORTHO05D013421 3.2e-35 151.8 142 59.9
BolC3t17283H Brassica oleracea HOM05D001374 ORTHO05D013421 4.1e-35 151.4 120 68.3
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 2.1e-34 149.1 150 57.3
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 1.5e-32 142.9 153 52.9
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 3.3e-32 141.7 144 54.9
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 4.3e-32 141.4 144 54.9
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 1.8e-30 136.0 141 53.9
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 1.7e-28 129.4 142 52.1
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 3.7e-28 128.3 144 51.4
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 3.7e-28 128.3 143 50.3
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 3.7e-28 128.3 143 50.3
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 8.3e-28 127.1 147 48.3
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 1.4e-27 126.3 143 50.3
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 9.2e-27 123.6 144 49.3
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 1.2e-26 123.2 142 50.0
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.6e-26 122.9 142 49.3
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 2.1e-26 122.5 142 49.3
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 2.7e-26 122.1 142 48.6
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 2.7e-26 122.1 144 47.9
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.7e-26 122.1 144 48.6
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 4.6e-26 121.3 144 47.2
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 4.6e-26 121.3 142 48.6
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 7.8e-26 120.6 149 47.7
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 7.8e-26 120.6 139 49.6
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.0e-25 120.2 144 47.2
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 1.3e-25 119.8 142 48.6
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 1.3e-25 119.8 143 48.3
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.3e-25 119.8 144 47.9
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 1.7e-25 119.4 142 47.2
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 1.7e-25 119.4 144 47.9
C03p49890 Brassica napus HOM05D001374 ORTHO05D013421 2.3e-25 119.0 116 61.2
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 2.3e-25 119.0 149 47.0
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 3.0e-25 118.6 143 48.3
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 3.0e-25 118.6 149 45.0
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 3.0e-25 118.6 142 48.6
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 3.9e-25 118.2 142 47.9
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 3.9e-25 118.2 146 47.9
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 3.9e-25 118.2 144 46.5
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 3.9e-25 118.2 150 48.0
Potri.010G122866 Populus trichocarpa HOM05D001374 ORTHO05D004296 5.1e-25 117.9 147 47.6
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 8.6e-25 117.1 146 46.6
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 8.6e-25 117.1 146 45.9
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 8.6e-25 117.1 146 45.9
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 8.6e-25 117.1 146 45.9
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.1e-24 116.7 144 47.2
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 1.1e-24 116.7 147 44.9
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.1e-24 116.7 145 48.3
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.5e-24 116.3 144 45.1
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.9e-24 115.9 142 47.9
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 1.9e-24 115.9 142 45.8
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.9e-24 115.9 143 47.6
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 1.9e-24 115.9 147 46.3
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 2.5e-24 115.5 141 49.6
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.5e-24 115.5 142 46.5
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 2.5e-24 115.5 142 46.5
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 2.5e-24 115.5 151 47.0
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 3.3e-24 115.2 141 47.5
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 3.3e-24 115.2 141 46.8
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 3.3e-24 115.2 142 47.2
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 3.3e-24 115.2 142 47.2
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 3.3e-24 115.2 141 46.8
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 3.3e-24 115.2 144 45.1
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 3.3e-24 115.2 147 46.3
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 4.3e-24 114.8 146 45.2
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.3e-24 114.8 146 45.2
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.3e-24 114.8 146 45.2
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 4.3e-24 114.8 147 45.6
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 4.3e-24 114.8 144 44.4
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 4.3e-24 114.8 145 47.6
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 5.6e-24 114.4 142 47.9
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 5.6e-24 114.4 152 46.7
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 5.6e-24 114.4 141 46.8
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 5.6e-24 114.4 147 48.3
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 7.3e-24 114.0 147 44.2
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 7.3e-24 114.0 153 45.8
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 7.3e-24 114.0 147 46.3
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 9.5e-24 113.6 146 46.6
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.2e-23 113.2 144 45.8
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.2e-23 113.2 142 46.5
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 1.2e-23 113.2 142 45.8
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.2e-23 113.2 146 44.5
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.6e-23 112.8 142 45.8
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.6e-23 112.8 141 46.1
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 2.1e-23 112.5 141 46.1
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 2.1e-23 112.5 142 45.8
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 2.1e-23 112.5 139 47.5
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 2.8e-23 112.1 148 45.9
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 2.8e-23 112.1 144 44.4
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 2.8e-23 112.1 145 42.8
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 3.6e-23 111.7 148 44.6
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 4.7e-23 111.3 152 46.7
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 4.7e-23 111.3 137 48.2
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 4.7e-23 111.3 152 46.1
Migut.O00776 Erythranthe guttata HOM05D001374 ORTHO05D004296 6.2e-23 110.9 137 46.0
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.1e-22 110.2 139 47.5
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 1.4e-22 109.8 141 45.4
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.4e-22 109.8 144 45.8
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 2.4e-22 109.0 142 45.8
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 2.4e-22 109.0 144 44.4
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 3.1e-22 108.6 137 45.3
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 4.0e-22 108.2 142 45.8
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 4.0e-22 108.2 144 44.4
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 5.2e-22 107.8 151 39.7
Glyma.20G117150 Glycine max HOM05D001374 ORTHO05D004296 6.8e-22 107.5 152 45.4
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 8.9e-22 107.1 142 44.4
MBI16_g23453_MAGBIO Magnolia biondii HOM05D001374 ORTHO05D004296 8.9e-22 107.1 150 45.3
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 1.2e-21 106.7 142 45.1
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 1.2e-21 106.7 142 43.7
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 2.0e-21 105.9 142 43.7
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 2.0e-21 105.9 141 44.7
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 3.4e-21 105.1 145 45.5
BraA05t19512Z Brassica rapa HOM05D001374 ORTHO05D013421 5.8e-21 104.4 58 87.9
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 1.3e-20 103.2 142 43.7
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 2.2e-20 102.4 142 43.7
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 3.8e-20 101.7 142 41.5
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 4.9e-20 101.3 144 41.0
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 1.4e-19 99.8 142 40.8
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 1.9e-19 99.4 117 47.0
CDE07G1626 Ceratophyllum demersum HOM05D001374 ORTHO05D013421 2.4e-19 99.0 149 40.9
SEGI_36555 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 4.1e-19 98.2 150 40.0
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 1.3e-17 93.2 143 38.5
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 1.3e-17 93.2 130 45.4
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 5.1e-17 91.3 132 41.7
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 5.1e-17 91.3 98 51.0
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 5.1e-17 91.3 112 48.2
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 6.6e-17 90.9 125 43.2
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 1.4e-14 83.2 143 34.3
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 4.0e-14 81.6 136 39.7
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 9.0e-14 80.5 143 33.6
Dinv21062 Davidia involucrata HOM05D001374 ORTHO05D004296 2.0e-13 79.3 61 68.9
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 2.6e-13 79.0 139 36.0
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 4.4e-13 78.2 141 36.2
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 1.9e-11 72.8 139 33.8
AL6G31230 Arabidopsis lyrata HOM05D001374 ORTHO05D013421 3.2e-11 72.0 58 60.3
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 4.2e-11 71.6 53 67.9
QL09p000919 Quercus lobata HOM05D000089 ORTHO05D000104 9.3e-11 70.5 71 56.3
QL03p003288 Quercus lobata HOM05D000089 ORTHO05D000104 1.2e-10 70.1 71 56.3
QL11p028036 Quercus lobata HOM05D000089 ORTHO05D000104 1.2e-10 70.1 42 78.6
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 3.5e-10 68.6 137 29.9
RcHm_v2.0_Chr1g0324521 Rosa chinensis HOM05D001374 ORTHO05D013421 2.3e-09 65.9 45 66.7
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 3.0e-09 65.5 96 40.6
CAN.G988.6 Capsicum annuum HOM05D001374 ORTHO05D018894 3.0e-09 65.5 45 66.7
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 3.0e-09 65.5 137 31.4
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 2.5e-08 62.4 40 72.5
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 4.3e-08 61.6 45 62.2
AagrBONN_evm.TU.Sc2ySwM_368.245 Anthoceros agrestis HOM05D000436 ORTHO05D000678 1.8e-06 56.2 50 56.0
Mapoly0089s0016 Marchantia polymorpha HOM05D001374 ORTHO05D013421 6.9e-06 54.3 138 30.4


User provided reference genes

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