Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 6.9e-157 557.4 303 100.0
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 1.4e-141 506.5 304 94.1
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.1e-133 480.3 323 86.4
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 1.8e-133 479.6 323 86.4
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.6e-127 459.1 312 86.5
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 3.4e-124 448.7 307 85.3
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 5.5e-122 441.4 303 86.1
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 6.3e-110 401.4 312 77.9
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 9.1e-109 397.5 313 75.4
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 5.0e-107 391.7 315 76.2
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 4.7e-105 385.2 329 73.3
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.8e-104 383.3 331 71.0
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 9.8e-103 377.5 269 80.7
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.2e-102 376.3 321 70.7
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 9.1e-101 370.9 318 74.2
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-98 364.0 226 88.5
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.9e-90 336.7 317 70.7
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.9e-90 336.7 211 91.9
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 6.8e-88 328.2 316 62.3
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 1.2e-87 327.4 286 66.8
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.5e-87 327.0 228 84.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 2.0e-87 326.6 310 62.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 1.7e-86 323.6 313 65.8
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 2.2e-86 323.2 281 67.6
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 1.1e-85 320.9 287 65.2
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 1.1e-85 320.9 272 67.6
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 1.1e-85 320.9 272 68.8
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 1.1e-85 320.9 301 62.5
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 1.4e-85 320.5 277 67.5
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.4e-85 320.5 306 62.7
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.8e-85 320.1 292 65.8
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 3.2e-85 319.3 310 63.9
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 9.2e-85 317.8 275 68.4
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 9.2e-85 317.8 292 65.1
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 3.5e-84 315.8 301 63.1
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.5e-84 315.8 267 67.4
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 1.7e-83 313.5 272 68.4
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 2.3e-83 313.2 290 64.1
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 2.3e-83 313.2 289 61.2
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 3.9e-83 312.4 281 65.5
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 3.9e-83 312.4 288 65.3
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 5.0e-83 312.0 296 61.8
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 5.0e-83 312.0 320 61.9
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 5.0e-83 312.0 302 63.9
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 6.6e-83 311.6 301 63.1
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 1.1e-82 310.8 266 63.5
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 1.5e-82 310.5 316 63.0
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.9e-82 310.1 312 59.6
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 3.3e-82 309.3 317 56.5
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 4.3e-82 308.9 293 61.1
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 9.5e-82 307.8 272 65.8
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 2.1e-81 306.6 251 71.7
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.8e-81 306.2 312 62.5
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 2.3e-80 303.1 298 62.1
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.0e-80 302.4 265 65.3
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 4.0e-80 302.4 303 61.4
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 5.2e-80 302.0 272 64.0
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 5.2e-80 302.0 300 59.7
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 8.9e-80 301.2 310 58.7
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 8.9e-80 301.2 310 57.4
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.2e-79 300.8 315 60.3
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.2e-79 300.8 283 63.3
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 2.6e-79 299.7 303 56.4
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 5.8e-79 298.5 302 61.3
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 7.5e-79 298.1 299 56.9
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.7e-78 297.0 286 60.8
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 2.2e-78 296.6 298 61.7
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.9e-78 296.2 260 61.5
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 3.7e-78 295.8 314 58.0
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 6.4e-78 295.0 284 59.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 1.9e-77 293.5 295 61.4
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.9e-77 293.5 306 58.5
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.9e-77 293.5 311 59.8
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 2.4e-77 293.1 266 64.3
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.4e-77 293.1 311 60.1
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.2e-76 290.8 294 56.8
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.0e-76 290.0 271 63.1
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 3.5e-76 289.3 296 60.1
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 4.6e-76 288.9 293 57.0
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 6.0e-76 288.5 293 57.0
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.0e-75 286.2 272 63.2
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 6.6e-75 285.0 297 56.6
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 5.6e-74 282.0 304 54.3
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 9.5e-74 281.2 251 66.9
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.6e-73 280.4 303 57.1
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.8e-72 276.9 300 56.3
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 6.8e-72 275.0 249 61.4
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 1.2e-71 274.2 266 57.5
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 2.0e-71 273.5 226 66.4
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 3.4e-71 272.7 301 53.5
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 5.8e-71 271.9 271 59.0
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 2.2e-70 270.0 312 56.7
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.9e-70 269.6 269 59.5
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.9e-70 269.6 278 61.9
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 4.6e-68 262.3 264 55.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 7.8e-68 261.5 283 54.8
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 7.8e-68 261.5 280 57.9
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 1.1e-66 257.7 292 52.7
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 7.3e-66 255.0 395 44.6
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 3.4e-63 246.1 230 62.2
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 2.4e-61 240.0 251 55.8
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.7e-59 233.8 295 49.5
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.0e-56 222.6 282 50.4
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 4.4e-55 219.2 128 89.1
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.9e-54 215.7 233 57.5
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.9e-53 213.8 187 64.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 4.2e-53 212.6 125 88.8
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 4.3e-50 202.6 187 62.0
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 9.6e-50 201.4 199 63.3
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.0e-48 196.1 262 46.9
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 7.9e-44 181.8 108 97.2
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 2.5e-42 176.8 254 43.3
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 3.3e-42 176.4 191 53.9
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 9.9e-39 164.9 252 41.3
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 9.9e-39 164.9 252 44.8
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 8.4e-38 161.8 131 73.3
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 6.7e-27 125.6 156 41.7
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 2.5e-26 123.6 222 37.4
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 7.2e-21 105.5 107 54.2
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 4.3e-18 96.3 68 72.1
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.1e-16 91.7 80 62.5
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 4.1e-16 89.7 81 59.3
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 5.3e-16 89.4 191 38.2
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 8.8e-11 72.0 102 44.1
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 1.5e-10 71.2 69 56.5
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.4e-08 64.7 65 58.5
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 5.3e-08 62.8 65 61.5


User provided reference genes

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